Complete instruction

This reverts commit 76e05518bb.

.circleci/config.yml

@@ -248,6 +248,7 @@ jobs:
             - run: isort --check-only examples templates tests src utils
             - run: flake8 examples templates tests src utils
             - run: python utils/check_copies.py
+            - run: python utils/check_dummies.py
             - run: python utils/check_repo.py
     check_repository_consistency:
         working_directory: ~/transformers

.circleci/deploy.sh

@@ -49,4 +49,5 @@ deploy_doc "10d7239" v2.10.0
 deploy_doc "b42586e" v2.11.0
 deploy_doc "7fb8bdf" v3.0.2
 deploy_doc "4b3ee9c" v3.1.0
-deploy_doc "3ebb1b3" # v3.2.0 Latest stable release
+deploy_doc "3ebb1b3" v3.2.0
+deploy_doc "0613f05" # v3.3.0 Latest stable release

.github/PULL_REQUEST_TEMPLATE.md

@@ -1,2 +1,61 @@
-<!-- This line specifies which issue to close after the pull request is merged. -->
-Fixes #{issue number}
+# What does this PR do?
+
+<!--
+Congratulations! You've made it this far! You're not quite done yet though.
+
+Once merged, your PR is going to appear in the release notes with the title you set, so make sure it's a great title that fully reflects the extent of your awesome contribution.
+
+Then, please replace this with a description of the change and which issue is fixed (if applicable). Please also include relevant motivation and context. List any dependencies (if any) that are required for this change.
+
+Once you're done, someone will review your PR shortly (see the section "Who can review?" below to tag some potential reviewers). They may suggest changes to make the code even better. If no one reviewed your PR after a week has passed, don't hesitate to post a new comment @-mentioning the same persons---sometimes notifications get lost.
+-->
+
+<!-- Remove if not applicable -->
+
+Fixes # (issue)
+
+
+## Before submitting
+- [ ] This PR fixes a typo or improves the docs (you can dimiss the other checks if that's the case).
+- [ ] Did you read the [contributor guideline](https://github.com/huggingface/transformers/blob/master/CONTRIBUTING.md#start-contributing-pull-requests), 
+      Pull Request section?
+- [ ] Was this discussed/approved via a Github issue or the [forum](https://discuss.huggingface.co/)? Please add a link
+      to the it if that's the case.
+- [ ] Did you make sure to update the documentation with your changes? Here are the
+      [documentation guidelines](https://github.com/huggingface/transformers/tree/master/docs), and
+      [here are tips on formatting docstrings](https://github.com/huggingface/transformers/tree/master/docs#writing-source-documentation).
+- [ ] Did you write any new necessary tests? 
+
+
+## Who can review?
+
+Anyone in the community is free to review the PR once the tests have passed. Feel free to tag
+members/contributors which may be interested in your PR.
+
+<!-- Your PR will be replied to more quickly if you can figure out the right person to tag with @
+
+ If you know how to use git blame, that is the easiest way, otherwise, here is a rough guide of **who to tag**.
+ Please tag fewer than 3 people.
+
+ albert, bert, GPT2, XLM: @LysandreJik 
+ tokenizers: @mfuntowicz
+ Trainer: @sgugger
+ Speed and Memory Benchmarks: @patrickvonplaten
+ Model Cards: @julien-c
+ Translation: @sshleifer
+ Summarization: @sshleifer
+ TextGeneration: @TevenLeScao 
+ examples/distillation: @VictorSanh
+ nlp datasets: [different repo](https://github.com/huggingface/nlp)
+ rust tokenizers: [different repo](https://github.com/huggingface/tokenizers)
+ Text Generation: @TevenLeScao
+ Blenderbot, Bart, Marian, Pegasus: @sshleifer
+ T5: @patrickvonplaten
+ Longformer/Reformer: @patrickvonplaten
+ TransfoXL/XLNet: @TevenLeScao 
+ examples/seq2seq: @sshleifer
+ examples/bert-loses-patience: @JetRunner
+ tensorflow: @jplu
+ examples/token-classification: @stefan-it
+ documentation: @sgugger
+ -->

.github/workflows/github-torch-hub.yml

@@ -30,7 +30,8 @@ jobs:
       run: |
         pip install --upgrade pip
         pip install torch
-        pip install numpy tokenizers filelock requests tqdm regex sentencepiece sacremoses packaging
+        pip install numpy filelock protobuf requests tqdm regex sentencepiece sacremoses packaging
+        pip install tokenizers==0.9.0.rc2
 
     - name: Torch hub list
       run: |

.github/workflows/self-push.yml

@@ -14,7 +14,7 @@ on:
 
 jobs:
   run_tests_torch_and_tf_gpu:
-    runs-on: self-hosted
+    runs-on: [self-hosted, single-gpu]
     steps:
     - uses: actions/checkout@v2
     - name: Python version
@@ -51,7 +51,8 @@ jobs:
     - name: Are GPUs recognized by our DL frameworks
       run: |
         source .env/bin/activate
-        python -c "import torch; print(torch.cuda.is_available())"
+        python -c "import torch; print('Cuda available:', torch.cuda.is_available())"
+        python -c "import torch; print('Number of GPUs available:', torch.cuda.device_count())"
 
     - name: Run all non-slow tests on GPU
       env:
@@ -62,3 +63,54 @@ jobs:
       run: |
         source .env/bin/activate
         python -m pytest -n 2 --dist=loadfile -s ./tests/
+
+  run_tests_torch_and_tf_multiple_gpu:
+    runs-on: [self-hosted, multi-gpu]
+    steps:
+      - uses: actions/checkout@v2
+      - name: Python version
+        run: |
+          which python
+          python --version
+          pip --version
+      - name: Current dir
+        run: pwd
+      - run: nvidia-smi
+
+      - name: Loading cache.
+        uses: actions/cache@v2
+        id: cache
+        with:
+          path: .env
+          key: v0-tests_tf_torch_multiple_gpu-${{ hashFiles('setup.py') }}
+
+      - name: Create new python env (on self-hosted runners we have to handle isolation ourselves)
+        run: |
+          python -m venv .env
+          source .env/bin/activate
+          which python
+          python --version
+          pip --version
+      - name: Install dependencies
+        run: |
+          source .env/bin/activate
+          pip install --upgrade pip
+          pip install torch!=1.6.0
+          pip install .[sklearn,testing,onnxruntime]
+          pip install git+https://github.com/huggingface/datasets
+
+      - name: Are GPUs recognized by our DL frameworks
+        run: |
+          source .env/bin/activate
+          python -c "import torch; print('Cuda available:', torch.cuda.is_available())"
+          python -c "import torch; print('Number of GPUs available:', torch.cuda.device_count())"
+
+      - name: Run all non-slow tests on GPU
+        env:
+          TF_FORCE_GPU_ALLOW_GROWTH: "true"
+          # TF_GPU_MEMORY_LIMIT: 4096
+          OMP_NUM_THREADS: 1
+          USE_CUDA: yes
+        run: |
+          source .env/bin/activate
+          python -m pytest -n 2 --dist=loadfile -s ./tests/

.github/workflows/self-scheduled.yml

@@ -10,7 +10,7 @@ on:
 
 jobs:
   run_all_tests_torch_and_tf_gpu:
-    runs-on: self-hosted
+    runs-on: [self-hosted, single-gpu]
     steps:
     - uses: actions/checkout@v2
 
@@ -48,7 +48,9 @@ jobs:
     - name: Are GPUs recognized by our DL frameworks
       run: |
         source .env/bin/activate
-        python -c "import torch; print(torch.cuda.is_available())"
+        python -c "import torch; print('Cuda available:', torch.cuda.is_available())"
+        python -c "import torch; print('Number of GPUs available:', torch.cuda.device_count())"
+
 
     - name: Run all tests on GPU
       env:
@@ -70,3 +72,66 @@ jobs:
         source .env/bin/activate
         pip install -r examples/requirements.txt
         python -m pytest -n 1 --dist=loadfile -s examples
+
+  run_all_tests_torch_and_tf_multiple_gpu:
+    runs-on: [self-hosted, multi-gpu]
+    steps:
+      - uses: actions/checkout@v2
+
+      - name: Loading cache.
+        uses: actions/cache@v2
+        id: cache
+        with:
+          path: .env
+          key: v0-slow_tests_tf_torch_multi_gpu-${{ hashFiles('setup.py') }}
+
+      - name: Python version
+        run: |
+          which python
+          python --version
+          pip --version
+      - name: Current dir
+        run: pwd
+      - run: nvidia-smi
+      - name: Create new python env (on self-hosted runners we have to handle isolation ourselves)
+        if: steps.cache.outputs.cache-hit != 'true'
+        run: |
+          python -m venv .env
+          source .env/bin/activate
+          which python
+          python --version
+          pip --version
+      - name: Install dependencies
+        run: |
+          source .env/bin/activate
+          pip install --upgrade pip
+          pip install torch!=1.6.0
+          pip install .[sklearn,testing,onnxruntime]
+          pip install git+https://github.com/huggingface/datasets
+
+      - name: Are GPUs recognized by our DL frameworks
+        run: |
+          source .env/bin/activate
+          python -c "import torch; print('Cuda available:', torch.cuda.is_available())"
+          python -c "import torch; print('Number of GPUs available:', torch.cuda.device_count())"
+
+      - name: Run all tests on GPU
+        env:
+          TF_FORCE_GPU_ALLOW_GROWTH: "true"
+          OMP_NUM_THREADS: 1
+          RUN_SLOW: yes
+          USE_CUDA: yes
+        run: |
+          source .env/bin/activate
+          python -m pytest -n 1 --dist=loadfile -s ./tests/
+
+      - name: Run examples tests on GPU
+        env:
+          TF_FORCE_GPU_ALLOW_GROWTH: "true"
+          OMP_NUM_THREADS: 1
+          RUN_SLOW: yes
+          USE_CUDA: yes
+        run: |
+          source .env/bin/activate
+          pip install -r examples/requirements.txt
+          python -m pytest -n 1 --dist=loadfile -s examples

CODE_OF_CONDUCT.md

@@ -0,0 +1,129 @@
+
+# Contributor Covenant Code of Conduct
+
+## Our Pledge
+
+We as members, contributors, and leaders pledge to make participation in our
+community a harassment-free experience for everyone, regardless of age, body
+size, visible or invisible disability, ethnicity, sex characteristics, gender
+identity and expression, level of experience, education, socio-economic status,
+nationality, personal appearance, race, religion, or sexual identity
+and orientation.
+
+We pledge to act and interact in ways that contribute to an open, welcoming,
+diverse, inclusive, and healthy community.
+
+## Our Standards
+
+Examples of behavior that contributes to a positive environment for our
+community include:
+
+* Demonstrating empathy and kindness toward other people
+* Being respectful of differing opinions, viewpoints, and experiences
+* Giving and gracefully accepting constructive feedback
+* Accepting responsibility and apologizing to those affected by our mistakes,
+  and learning from the experience
+* Focusing on what is best not just for us as individuals, but for the
+  overall community
+
+Examples of unacceptable behavior include:
+
+* The use of sexualized language or imagery, and sexual attention or
+  advances of any kind
+* Trolling, insulting or derogatory comments, and personal or political attacks
+* Public or private harassment
+* Publishing others' private information, such as a physical or email
+  address, without their explicit permission
+* Other conduct which could reasonably be considered inappropriate in a
+  professional setting
+
+## Enforcement Responsibilities
+
+Community leaders are responsible for clarifying and enforcing our standards of
+acceptable behavior and will take appropriate and fair corrective action in
+response to any behavior that they deem inappropriate, threatening, offensive,
+or harmful.
+
+Community leaders have the right and responsibility to remove, edit, or reject
+comments, commits, code, wiki edits, issues, and other contributions that are
+not aligned to this Code of Conduct, and will communicate reasons for moderation
+decisions when appropriate.
+
+## Scope
+
+This Code of Conduct applies within all community spaces, and also applies when
+an individual is officially representing the community in public spaces.
+Examples of representing our community include using an official e-mail address,
+posting via an official social media account, or acting as an appointed
+representative at an online or offline event.
+
+## Enforcement
+
+Instances of abusive, harassing, or otherwise unacceptable behavior may be
+reported to the community leaders responsible for enforcement at
+feedback@huggingface.co.
+All complaints will be reviewed and investigated promptly and fairly.
+
+All community leaders are obligated to respect the privacy and security of the
+reporter of any incident.
+
+## Enforcement Guidelines
+
+Community leaders will follow these Community Impact Guidelines in determining
+the consequences for any action they deem in violation of this Code of Conduct:
+
+### 1. Correction
+
+**Community Impact**: Use of inappropriate language or other behavior deemed
+unprofessional or unwelcome in the community.
+
+**Consequence**: A private, written warning from community leaders, providing
+clarity around the nature of the violation and an explanation of why the
+behavior was inappropriate. A public apology may be requested.
+
+### 2. Warning
+
+**Community Impact**: A violation through a single incident or series
+of actions.
+
+**Consequence**: A warning with consequences for continued behavior. No
+interaction with the people involved, including unsolicited interaction with
+those enforcing the Code of Conduct, for a specified period of time. This
+includes avoiding interactions in community spaces as well as external channels
+like social media. Violating these terms may lead to a temporary or
+permanent ban.
+
+### 3. Temporary Ban
+
+**Community Impact**: A serious violation of community standards, including
+sustained inappropriate behavior.
+
+**Consequence**: A temporary ban from any sort of interaction or public
+communication with the community for a specified period of time. No public or
+private interaction with the people involved, including unsolicited interaction
+with those enforcing the Code of Conduct, is allowed during this period.
+Violating these terms may lead to a permanent ban.
+
+### 4. Permanent Ban
+
+**Community Impact**: Demonstrating a pattern of violation of community
+standards, including sustained inappropriate behavior,  harassment of an
+individual, or aggression toward or disparagement of classes of individuals.
+
+**Consequence**: A permanent ban from any sort of public interaction within
+the community.
+
+## Attribution
+
+This Code of Conduct is adapted from the [Contributor Covenant][homepage],
+version 2.0, available at
+https://www.contributor-covenant.org/version/2/0/code_of_conduct.html.
+
+Community Impact Guidelines were inspired by [Mozilla's code of conduct
+enforcement ladder](https://github.com/mozilla/diversity).
+
+[homepage]: https://www.contributor-covenant.org
+
+For answers to common questions about this code of conduct, see the FAQ at
+https://www.contributor-covenant.org/faq. Translations are available at
+https://www.contributor-covenant.org/translations.

CONTRIBUTING.md

@@ -9,6 +9,9 @@ It also helps us if you spread the word: reference the library from blog posts
 on the awesome projects it made possible, shout out on Twitter every time it has
 helped you, or simply star the repo to say "thank you".
 
+Whichever way you choose to contribute, please be mindful to respect our
+[code of conduct](https://github.com/huggingface/transformers/blob/master/CODE_OF_CONDUCT.md).
+
 ## You can contribute in so many ways!
 
 There are 4 ways you can contribute to transformers:
@@ -170,12 +173,19 @@ Follow these steps to start contributing:
    $ make style
    ```
 
-   `transformers` also uses `flake8` to check for coding mistakes. Quality
+   `transformers` also uses `flake8` and a few custom scripts to check for coding mistakes. Quality
    control runs in CI, however you can also run the same checks with:
 
    ```bash
    $ make quality
    ```
+   You can do the automatic style corrections and code verifications that can't be automated in one go:
+
+   ```bash
+   $ make fixup
+   ```
+
+   This target is also optimized to only work with files modified by the PR you're working on.
 
    If you're modifying documents under `docs/source`, make sure to validate that
    they can still be built. This check also runs in CI. To run a local check

Makefile

@@ -1,24 +1,53 @@
-.PHONY: quality style test test-examples docs
+.PHONY: modified_only_fixup extra_quality_checks quality style fixup fix-copies test test-examples docs
+
+
+check_dirs := examples templates tests src utils
+
+# get modified files since the branch was made
+fork_point_sha := $(shell git merge-base --fork-point master)
+joined_dirs := $(shell echo $(check_dirs) | tr " " "|")
+modified_py_files := $(shell git diff --name-only $(fork_point_sha) | egrep '^($(joined_dirs))' | egrep '\.py$$')
+#$(info modified files are: $(modified_py_files))
+
+modified_only_fixup:
+	@if [ -n "$(modified_py_files)" ]; then \
+		echo "Checking/fixing $(modified_py_files)"; \
+		black $(modified_py_files); \
+		isort $(modified_py_files); \
+		flake8 $(modified_py_files); \
+	else \
+		echo "No library .py files were modified"; \
+	fi
 
 # Check that source code meets quality standards
 
-quality:
-	black --check examples templates tests src utils
-	isort --check-only examples templates tests src utils
-	flake8 examples templates tests src utils
+extra_quality_checks:
 	python utils/check_copies.py
+	python utils/check_dummies.py
 	python utils/check_repo.py
 
-# Format source code automatically
+# this target runs checks on all files
+quality:
+	black --check $(check_dirs)
+	isort --check-only $(check_dirs)
+	flake8 $(check_dirs)
+	${MAKE} extra_quality_checks
+
+# Format source code automatically and check is there are any problems left that need manual fixing
 
 style:
-	black examples templates tests src utils
-	isort examples templates tests src utils
+	black $(check_dirs)
+	isort $(check_dirs)
+
+# Super fast fix and check target that only works on relevant modified files since the branch was made
+
+fixup: modified_only_fixup extra_quality_checks
 
 # Make marked copies of snippets of codes conform to the original
 
 fix-copies:
 	python utils/check_copies.py --fix_and_overwrite
+	python utils/check_dummies.py --fix_and_overwrite
 
 # Run tests for the library
 

README.md

@@ -16,15 +16,18 @@
     <a href="https://github.com/huggingface/transformers/releases">
         <img alt="GitHub release" src="https://img.shields.io/github/release/huggingface/transformers.svg">
     </a>
+    <a href="https://github.com/huggingface/transformers/blob/master/CODE_OF_CONDUCT.md">
+        <img alt="Contributor Covenant" src="https://img.shields.io/badge/Contributor%20Covenant-v2.0%20adopted-ff69b4.svg">
+    </a>
 </p>
 
 <h3 align="center">
 <p>State-of-the-art Natural Language Processing for PyTorch and TensorFlow 2.0
 </h3>
 
-🤗 Transformers provides thousands of pretrained models to perform tasks on texts such as classification, information extraction, question answering, summarization, translation, text generation, etc in 100+ languages. Its aim is to make cutting-edge NLP easier to use for everyone. 
+🤗 Transformers provides thousands of pretrained models to perform tasks on texts such as classification, information extraction, question answering, summarization, translation, text generation, etc in 100+ languages. Its aim is to make cutting-edge NLP easier to use for everyone.
 
-🤗 Transformers provides APIs to quickly download and use those pretrained models on a given text, fine-tune them on your own datasets then share them with the community on our [model hub](https://huggingface.co/models). At the same time, each python module defining an architecture can be used as a standalone and modified to enable quick research experiments. 
+🤗 Transformers provides APIs to quickly download and use those pretrained models on a given text, fine-tune them on your own datasets then share them with the community on our [model hub](https://huggingface.co/models). At the same time, each python module defining an architecture can be used as a standalone and modified to enable quick research experiments.
 
 🤗 Transformers is backed by the two most popular deep learning libraries, [PyTorch](https://pytorch.org/) and [TensorFlow](https://www.tensorflow.org/), with a seamless integration between them, allowing you to train your models with one then load it for inference with the other.
 
@@ -35,7 +38,7 @@
 
 You can test most of our models directly on their pages from the [model hub](https://huggingface.co/models). We also offer an [inference API](https://huggingface.co/pricing) to use those models.
 
-Here are a few examples: 
+Here are a few examples:
 - [Masked word completion with BERT](https://huggingface.co/bert-base-uncased?text=Paris+is+the+%5BMASK%5D+of+France)
 - [Name Entity Recognition with Electra](https://huggingface.co/dbmdz/electra-large-discriminator-finetuned-conll03-english?text=My+name+is+Sarah+and+I+live+in+London+city)
 - [Text generation with GPT-2](https://huggingface.co/gpt2?text=A+long+time+ago%2C+)
@@ -48,7 +51,7 @@ Here are a few examples:
 
 ## Quick tour
 
-To immediately use a model on a given text, we provide the `pipeline` API. Pipelines group together a pretrained model with the preprocessing that was used during that model training. Here is how to quickly use a pipeline to classify positive versus negative texts 
+To immediately use a model on a given text, we provide the `pipeline` API. Pipelines group together a pretrained model with the preprocessing that was used during that model training. Here is how to quickly use a pipeline to classify positive versus negative texts
 
 ```python
 >>> from transformers import pipeline
@@ -59,7 +62,7 @@ To immediately use a model on a given text, we provide the `pipeline` API. Pipel
 [{'label': 'POSITIVE', 'score': 0.9978193640708923}]
 ```
 
-The second line of code downloads and caches the pretrained model used by the pipeline, the third line evaluates it on the given text. Here the answer is "positive" with a confidence of 99.8%. 
+The second line of code downloads and caches the pretrained model used by the pipeline, the third line evaluates it on the given text. Here the answer is "positive" with a confidence of 99.8%.
 
 This is another example of pipeline used for that can extract question answers from some context:
 
@@ -108,7 +111,7 @@ The model itself is a regular [Pytorch `nn.Module`](https://pytorch.org/docs/sta
 1. Easy-to-use state-of-the-art models:
     - High performance on NLU and NLG tasks.
     - Low barrier to entry for educators and practitioners.
-    - Few user-facing abastractions with just three classes to learn.
+    - Few user-facing abstractions with just three classes to learn.
     - A unified API for using all our pretrained models.
 
 1. Lower compute costs, smaller carbon footprint:
@@ -124,7 +127,7 @@ The model itself is a regular [Pytorch `nn.Module`](https://pytorch.org/docs/sta
 1. Easily customize a model or an example to your needs:
     - Examples for each architecture to reproduce the results by the official authors of said architecture.
     - Expose the models internal as consistently as possible.
-    - Model files can be used independently of the library for quick experiments. 
+    - Model files can be used independently of the library for quick experiments.
 
 ## Why shouldn't I use transformers?
 
@@ -155,37 +158,41 @@ If you'd like to play with the examples, you must [install the library from sour
 
 🤗 Transformers currently provides the following architectures (see [here](https://huggingface.co/transformers/model_summary.html) for a high-level summary of each them):
 
+1. **[ALBERT](https://huggingface.co/transformers/model_doc/albert.html)** (from Google Research and the Toyota Technological Institute at Chicago) released with the paper [ALBERT: A Lite BERT for Self-supervised Learning of Language Representations](https://arxiv.org/abs/1909.11942), by Zhenzhong Lan, Mingda Chen, Sebastian Goodman, Kevin Gimpel, Piyush Sharma, Radu Soricut.
+1. **[BART](https://huggingface.co/transformers/model_doc/bart.html)** (from Facebook) released with the paper [BART: Denoising Sequence-to-Sequence Pre-training for Natural Language Generation, Translation, and Comprehension](https://arxiv.org/pdf/1910.13461.pdf) by Mike Lewis, Yinhan Liu, Naman Goyal, Marjan Ghazvininejad, Abdelrahman Mohamed, Omer Levy, Ves Stoyanov and Luke Zettlemoyer.
 1. **[BERT](https://huggingface.co/transformers/model_doc/bert.html)** (from Google) released with the paper [BERT: Pre-training of Deep Bidirectional Transformers for Language Understanding](https://arxiv.org/abs/1810.04805) by Jacob Devlin, Ming-Wei Chang, Kenton Lee and Kristina Toutanova.
-2. **[GPT](https://huggingface.co/transformers/model_doc/gpt.html)** (from OpenAI) released with the paper [Improving Language Understanding by Generative Pre-Training](https://blog.openai.com/language-unsupervised/) by Alec Radford, Karthik Narasimhan, Tim Salimans and Ilya Sutskever.
-3. **[GPT-2](https://huggingface.co/transformers/model_doc/gpt2.html)** (from OpenAI) released with the paper [Language Models are Unsupervised Multitask Learners](https://blog.openai.com/better-language-models/) by Alec Radford*, Jeffrey Wu*, Rewon Child, David Luan, Dario Amodei** and Ilya Sutskever**.
-4. **[Transformer-XL](https://huggingface.co/transformers/model_doc/transformerxl.html)** (from Google/CMU) released with the paper [Transformer-XL: Attentive Language Models Beyond a Fixed-Length Context](https://arxiv.org/abs/1901.02860) by Zihang Dai*, Zhilin Yang*, Yiming Yang, Jaime Carbonell, Quoc V. Le, Ruslan Salakhutdinov.
-5. **[XLNet](https://huggingface.co/transformers/model_doc/xlnet.html)** (from Google/CMU) released with the paper [​XLNet: Generalized Autoregressive Pretraining for Language Understanding](https://arxiv.org/abs/1906.08237) by Zhilin Yang*, Zihang Dai*, Yiming Yang, Jaime Carbonell, Ruslan Salakhutdinov, Quoc V. Le.
-6. **[XLM](https://huggingface.co/transformers/model_doc/xlm.html)** (from Facebook) released together with the paper [Cross-lingual Language Model Pretraining](https://arxiv.org/abs/1901.07291) by Guillaume Lample and Alexis Conneau.
-7. **[RoBERTa](https://huggingface.co/transformers/model_doc/roberta.html)** (from Facebook), released together with the paper a [Robustly Optimized BERT Pretraining Approach](https://arxiv.org/abs/1907.11692) by Yinhan Liu, Myle Ott, Naman Goyal, Jingfei Du, Mandar Joshi, Danqi Chen, Omer Levy, Mike Lewis, Luke Zettlemoyer, Veselin Stoyanov.
-8. **[DistilBERT](https://huggingface.co/transformers/model_doc/distilbert.html)** (from HuggingFace), released together with the paper [DistilBERT, a distilled version of BERT: smaller, faster, cheaper and lighter](https://arxiv.org/abs/1910.01108) by Victor Sanh, Lysandre Debut and Thomas Wolf. The same method has been applied to compress GPT2 into [DistilGPT2](https://github.com/huggingface/transformers/tree/master/examples/distillation), RoBERTa into [DistilRoBERTa](https://github.com/huggingface/transformers/tree/master/examples/distillation), Multilingual BERT into [DistilmBERT](https://github.com/huggingface/transformers/tree/master/examples/distillation) and a German version of DistilBERT.
-9. **[CTRL](https://huggingface.co/transformers/model_doc/ctrl.html)** (from Salesforce) released with the paper [CTRL: A Conditional Transformer Language Model for Controllable Generation](https://arxiv.org/abs/1909.05858) by Nitish Shirish Keskar*, Bryan McCann*, Lav R. Varshney, Caiming Xiong and Richard Socher.
-10. **[CamemBERT](https://huggingface.co/transformers/model_doc/camembert.html)** (from Inria/Facebook/Sorbonne) released with the paper [CamemBERT: a Tasty French Language Model](https://arxiv.org/abs/1911.03894) by Louis Martin*, Benjamin Muller*, Pedro Javier Ortiz Suárez*, Yoann Dupont, Laurent Romary, Éric Villemonte de la Clergerie, Djamé Seddah and Benoît Sagot.
-11. **[ALBERT](https://huggingface.co/transformers/model_doc/albert.html)** (from Google Research and the Toyota Technological Institute at Chicago) released with the paper [ALBERT: A Lite BERT for Self-supervised Learning of Language Representations](https://arxiv.org/abs/1909.11942), by Zhenzhong Lan, Mingda Chen, Sebastian Goodman, Kevin Gimpel, Piyush Sharma, Radu Soricut.
-12. **[T5](https://huggingface.co/transformers/model_doc/t5.html)** (from Google AI) released with the paper [Exploring the Limits of Transfer Learning with a Unified Text-to-Text Transformer](https://arxiv.org/abs/1910.10683) by Colin Raffel and Noam Shazeer and Adam Roberts and Katherine Lee and Sharan Narang and Michael Matena and Yanqi Zhou and Wei Li and Peter J. Liu.
-13. **[XLM-RoBERTa](https://huggingface.co/transformers/model_doc/xlmroberta.html)** (from Facebook AI), released together with the paper [Unsupervised Cross-lingual Representation Learning at Scale](https://arxiv.org/abs/1911.02116) by Alexis Conneau*, Kartikay Khandelwal*, Naman Goyal, Vishrav Chaudhary, Guillaume Wenzek, Francisco Guzmán, Edouard Grave, Myle Ott, Luke Zettlemoyer and Veselin Stoyanov.
-14. **[MMBT](https://github.com/facebookresearch/mmbt/)** (from Facebook), released together with the paper a [Supervised Multimodal Bitransformers for Classifying Images and Text](https://arxiv.org/pdf/1909.02950.pdf) by Douwe Kiela, Suvrat Bhooshan, Hamed Firooz, Davide Testuggine.
-15. **[FlauBERT](https://huggingface.co/transformers/model_doc/flaubert.html)** (from CNRS) released with the paper [FlauBERT: Unsupervised Language Model Pre-training for French](https://arxiv.org/abs/1912.05372) by Hang Le, Loïc Vial, Jibril Frej, Vincent Segonne, Maximin Coavoux, Benjamin Lecouteux, Alexandre Allauzen, Benoît Crabbé, Laurent Besacier, Didier Schwab.
-16. **[BART](https://huggingface.co/transformers/model_doc/bart.html)** (from Facebook) released with the paper [BART: Denoising Sequence-to-Sequence Pre-training for Natural Language Generation, Translation, and Comprehension](https://arxiv.org/pdf/1910.13461.pdf) by Mike Lewis, Yinhan Liu, Naman Goyal, Marjan Ghazvininejad, Abdelrahman Mohamed, Omer Levy, Ves Stoyanov and Luke Zettlemoyer.
-17. **[ELECTRA](https://huggingface.co/transformers/model_doc/electra.html)** (from Google Research/Stanford University) released with the paper [ELECTRA: Pre-training text encoders as discriminators rather than generators](https://arxiv.org/abs/2003.10555) by Kevin Clark, Minh-Thang Luong, Quoc V. Le, Christopher D. Manning.
-18. **[DialoGPT](https://huggingface.co/transformers/model_doc/dialogpt.html)** (from Microsoft Research) released with the paper [DialoGPT: Large-Scale Generative Pre-training for Conversational Response Generation](https://arxiv.org/abs/1911.00536) by Yizhe Zhang, Siqi Sun, Michel Galley, Yen-Chun Chen, Chris Brockett, Xiang Gao, Jianfeng Gao, Jingjing Liu, Bill Dolan.
-19. **[Reformer](https://huggingface.co/transformers/model_doc/reformer.html)** (from Google Research) released with the paper [Reformer: The Efficient Transformer](https://arxiv.org/abs/2001.04451) by Nikita Kitaev, Łukasz Kaiser, Anselm Levskaya.
-20. **[MarianMT](https://huggingface.co/transformers/model_doc/marian.html)** Machine translation models trained using [OPUS](http://opus.nlpl.eu/) data by Jörg Tiedemann. The [Marian Framework](https://marian-nmt.github.io/) is being developed by the Microsoft Translator Team.
-21. **[Longformer](https://huggingface.co/transformers/model_doc/longformer.html)** (from AllenAI) released with the paper [Longformer: The Long-Document Transformer](https://arxiv.org/abs/2004.05150) by Iz Beltagy, Matthew E. Peters, Arman Cohan.
-22. **[DPR](https://github.com/facebookresearch/DPR)** (from Facebook) released with the paper [Dense Passage Retrieval
+1. **[BERT For Sequence Generation](https://huggingface.co/transformers/model_doc/bertgeneration.html)** (from Google) released with the paper [Leveraging Pre-trained Checkpoints for Sequence Generation Tasks](https://arxiv.org/abs/1907.12461) by Sascha Rothe, Shashi Narayan, Aliaksei Severyn.
+1. **[Blenderbot](https://huggingface.co/transformers/master/model_doc/blenderbot.html)** (from Facebook) released with the paper [Recipes for building an open-domain chatbot](https://arxiv.org/abs/2004.13637) by Stephen Roller, Emily Dinan, Naman Goyal, Da Ju, Mary Williamson, Yinhan Liu, Jing Xu, Myle Ott, Kurt Shuster, Eric M. Smith, Y-Lan Boureau, Jason Weston.
+1. **[CamemBERT](https://huggingface.co/transformers/model_doc/camembert.html)** (from Inria/Facebook/Sorbonne) released with the paper [CamemBERT: a Tasty French Language Model](https://arxiv.org/abs/1911.03894) by Louis Martin*, Benjamin Muller*, Pedro Javier Ortiz Suárez*, Yoann Dupont, Laurent Romary, Éric Villemonte de la Clergerie, Djamé Seddah and Benoît Sagot.
+1. **[CTRL](https://huggingface.co/transformers/model_doc/ctrl.html)** (from Salesforce) released with the paper [CTRL: A Conditional Transformer Language Model for Controllable Generation](https://arxiv.org/abs/1909.05858) by Nitish Shirish Keskar*, Bryan McCann*, Lav R. Varshney, Caiming Xiong and Richard Socher.
+1. **[DeBERTa](https://huggingface.co/transformers/master/model_doc/deberta.html)** (from Microsoft Research) released with the paper [DeBERTa: Decoding-enhanced BERT with Disentangled Attention](https://arxiv.org/abs/2006.03654) by Pengcheng He, Xiaodong Liu, Jianfeng Gao, Weizhu Chen.
+1. **[DialoGPT](https://huggingface.co/transformers/model_doc/dialogpt.html)** (from Microsoft Research) released with the paper [DialoGPT: Large-Scale Generative Pre-training for Conversational Response Generation](https://arxiv.org/abs/1911.00536) by Yizhe Zhang, Siqi Sun, Michel Galley, Yen-Chun Chen, Chris Brockett, Xiang Gao, Jianfeng Gao, Jingjing Liu, Bill Dolan.
+1. **[DistilBERT](https://huggingface.co/transformers/model_doc/distilbert.html)** (from HuggingFace), released together with the paper [DistilBERT, a distilled version of BERT: smaller, faster, cheaper and lighter](https://arxiv.org/abs/1910.01108) by Victor Sanh, Lysandre Debut and Thomas Wolf. The same method has been applied to compress GPT2 into [DistilGPT2](https://github.com/huggingface/transformers/tree/master/examples/distillation), RoBERTa into [DistilRoBERTa](https://github.com/huggingface/transformers/tree/master/examples/distillation), Multilingual BERT into [DistilmBERT](https://github.com/huggingface/transformers/tree/master/examples/distillation) and a German version of DistilBERT.
+1. **[DPR](https://huggingface.co/transformers/model_doc/dpr.html)** (from Facebook) released with the paper [Dense Passage Retrieval
 for Open-Domain Question Answering](https://arxiv.org/abs/2004.04906) by Vladimir Karpukhin, Barlas Oğuz, Sewon
 Min, Patrick Lewis, Ledell Wu, Sergey Edunov, Danqi Chen, and Wen-tau Yih.
-23. **[Pegasus](https://github.com/google-research/pegasus)** (from Google) released with the paper [PEGASUS: Pre-training with Extracted Gap-sentences for Abstractive Summarization](https://arxiv.org/abs/1912.08777)> by Jingqing Zhang, Yao Zhao, Mohammad Saleh and Peter J. Liu.
-24. **[MBart](https://github.com/pytorch/fairseq/tree/master/examples/mbart)** (from Facebook) released with the paper  [Multilingual Denoising Pre-training for Neural Machine Translation](https://arxiv.org/abs/2001.08210) by Yinhan Liu, Jiatao Gu, Naman Goyal, Xian Li, Sergey Edunov, Marjan Ghazvininejad, Mike Lewis, Luke Zettlemoyer.  
-25. **[LXMERT](https://github.com/airsplay/lxmert)** (from UNC Chapel Hill) released with the paper [LXMERT: Learning Cross-Modality Encoder Representations from Transformers for Open-Domain Question Answering](https://arxiv.org/abs/1908.07490) by Hao Tan and Mohit Bansal.
-26. **[Funnel Transformer](https://github.com/laiguokun/Funnel-Transformer)** (from CMU/Google Brain) released with the paper [Funnel-Transformer: Filtering out Sequential Redundancy for Efficient Language Processing](https://arxiv.org/abs/2006.03236) by Zihang Dai, Guokun Lai, Yiming Yang, Quoc V. Le.
-27. **[LayoutLM](https://github.com/microsoft/unilm/tree/master/layoutlm)** (from Microsoft Research Asia) released with the paper [LayoutLM: Pre-training of Text and Layout for Document Image Understanding](https://arxiv.org/abs/1912.13318) by Yiheng Xu, Minghao Li, Lei Cui, Shaohan Huang, Furu Wei, Ming Zhou.
-28. **[Other community models](https://huggingface.co/models)**, contributed by the [community](https://huggingface.co/users).
-29. Want to contribute a new model? We have added a **detailed guide and templates** to guide you in the process of adding a new model. You can find them in the [`templates`](./templates) folder of the repository. Be sure to check the [contributing guidelines](./CONTRIBUTING.md) and contact the maintainers or open an issue to collect feedbacks before starting your PR.
+1. **[ELECTRA](https://huggingface.co/transformers/model_doc/electra.html)** (from Google Research/Stanford University) released with the paper [ELECTRA: Pre-training text encoders as discriminators rather than generators](https://arxiv.org/abs/2003.10555) by Kevin Clark, Minh-Thang Luong, Quoc V. Le, Christopher D. Manning.
+1. **[FlauBERT](https://huggingface.co/transformers/model_doc/flaubert.html)** (from CNRS) released with the paper [FlauBERT: Unsupervised Language Model Pre-training for French](https://arxiv.org/abs/1912.05372) by Hang Le, Loïc Vial, Jibril Frej, Vincent Segonne, Maximin Coavoux, Benjamin Lecouteux, Alexandre Allauzen, Benoît Crabbé, Laurent Besacier, Didier Schwab.
+1. **[Funnel Transformer](https://huggingface.co/transformers/model_doc/funnel.html)** (from CMU/Google Brain) released with the paper [Funnel-Transformer: Filtering out Sequential Redundancy for Efficient Language Processing](https://arxiv.org/abs/2006.03236) by Zihang Dai, Guokun Lai, Yiming Yang, Quoc V. Le.
+1. **[GPT](https://huggingface.co/transformers/model_doc/gpt.html)** (from OpenAI) released with the paper [Improving Language Understanding by Generative Pre-Training](https://blog.openai.com/language-unsupervised/) by Alec Radford, Karthik Narasimhan, Tim Salimans and Ilya Sutskever.
+1. **[GPT-2](https://huggingface.co/transformers/model_doc/gpt2.html)** (from OpenAI) released with the paper [Language Models are Unsupervised Multitask Learners](https://blog.openai.com/better-language-models/) by Alec Radford*, Jeffrey Wu*, Rewon Child, David Luan, Dario Amodei** and Ilya Sutskever**.
+1. **[LayoutLM](https://huggingface.co/transformers/model_doc/layoutlm.html)** (from Microsoft Research Asia) released with the paper [LayoutLM: Pre-training of Text and Layout for Document Image Understanding](https://arxiv.org/abs/1912.13318) by Yiheng Xu, Minghao Li, Lei Cui, Shaohan Huang, Furu Wei, Ming Zhou.
+1. **[Longformer](https://huggingface.co/transformers/model_doc/longformer.html)** (from AllenAI) released with the paper [Longformer: The Long-Document Transformer](https://arxiv.org/abs/2004.05150) by Iz Beltagy, Matthew E. Peters, Arman Cohan.
+1. **[LXMERT](https://huggingface.co/transformers/model_doc/lxmert.html)** (from UNC Chapel Hill) released with the paper [LXMERT: Learning Cross-Modality Encoder Representations from Transformers for Open-Domain Question Answering](https://arxiv.org/abs/1908.07490) by Hao Tan and Mohit Bansal.
+1. **[MarianMT](https://huggingface.co/transformers/model_doc/marian.html)** Machine translation models trained using [OPUS](http://opus.nlpl.eu/) data by Jörg Tiedemann. The [Marian Framework](https://marian-nmt.github.io/) is being developed by the Microsoft Translator Team.
+1. **[MBart](https://huggingface.co/transformers/model_doc/mbart.html)** (from Facebook) released with the paper  [Multilingual Denoising Pre-training for Neural Machine Translation](https://arxiv.org/abs/2001.08210) by Yinhan Liu, Jiatao Gu, Naman Goyal, Xian Li, Sergey Edunov, Marjan Ghazvininejad, Mike Lewis, Luke Zettlemoyer.
+1. **[Pegasus](https://huggingface.co/transformers/model_doc/pegasus.html)** (from Google) released with the paper [PEGASUS: Pre-training with Extracted Gap-sentences for Abstractive Summarization](https://arxiv.org/abs/1912.08777)> by Jingqing Zhang, Yao Zhao, Mohammad Saleh and Peter J. Liu.
+1. **[Reformer](https://huggingface.co/transformers/model_doc/reformer.html)** (from Google Research) released with the paper [Reformer: The Efficient Transformer](https://arxiv.org/abs/2001.04451) by Nikita Kitaev, Łukasz Kaiser, Anselm Levskaya.
+1. **[RoBERTa](https://huggingface.co/transformers/model_doc/roberta.html)** (from Facebook), released together with the paper a [Robustly Optimized BERT Pretraining Approach](https://arxiv.org/abs/1907.11692) by Yinhan Liu, Myle Ott, Naman Goyal, Jingfei Du, Mandar Joshi, Danqi Chen, Omer Levy, Mike Lewis, Luke Zettlemoyer, Veselin Stoyanov.
+ultilingual BERT into [DistilmBERT](https://github.com/huggingface/transformers/tree/master/examples/distillation) and a German version of DistilBERT.
+1. **[SqueezeBert](https://huggingface.co/transformers/master/model_doc/squeezebert.html)** released with the paper [SqueezeBERT: What can computer vision teach NLP about efficient neural networks?](https://arxiv.org/abs/2006.11316) by Forrest N. Iandola, Albert E. Shaw, Ravi Krishna, and Kurt W. Keutzer.
+1. **[T5](https://huggingface.co/transformers/model_doc/t5.html)** (from Google AI) released with the paper [Exploring the Limits of Transfer Learning with a Unified Text-to-Text Transformer](https://arxiv.org/abs/1910.10683) by Colin Raffel and Noam Shazeer and Adam Roberts and Katherine Lee and Sharan Narang and Michael Matena and Yanqi Zhou and Wei Li and Peter J. Liu.
+1. **[Transformer-XL](https://huggingface.co/transformers/model_doc/transformerxl.html)** (from Google/CMU) released with the paper [Transformer-XL: Attentive Language Models Beyond a Fixed-Length Context](https://arxiv.org/abs/1901.02860) by Zihang Dai*, Zhilin Yang*, Yiming Yang, Jaime Carbonell, Quoc V. Le, Ruslan Salakhutdinov.
+1. **[XLM](https://huggingface.co/transformers/model_doc/xlm.html)** (from Facebook) released together with the paper [Cross-lingual Language Model Pretraining](https://arxiv.org/abs/1901.07291) by Guillaume Lample and Alexis Conneau.
+1. **[XLM-RoBERTa](https://huggingface.co/transformers/model_doc/xlmroberta.html)** (from Facebook AI), released together with the paper [Unsupervised Cross-lingual Representation Learning at Scale](https://arxiv.org/abs/1911.02116) by Alexis Conneau*, Kartikay Khandelwal*, Naman Goyal, Vishrav Chaudhary, Guillaume Wenzek, Francisco Guzmán, Edouard Grave, Myle Ott, Luke Zettlemoyer and Veselin Stoyanov.
+1. **[XLNet](https://huggingface.co/transformers/model_doc/xlnet.html)** (from Google/CMU) released with the paper [​XLNet: Generalized Autoregressive Pretraining for Language Understanding](https://arxiv.org/abs/1906.08237) by Zhilin Yang*, Zihang Dai*, Yiming Yang, Jaime Carbonell, Ruslan Salakhutdinov, Quoc V. Le.
+1. **[Other community models](https://huggingface.co/models)**, contributed by the [community](https://huggingface.co/users).
+1. Want to contribute a new model? We have added a **detailed guide and templates** to guide you in the process of adding a new model. You can find them in the [`templates`](./templates) folder of the repository. Be sure to check the [contributing guidelines](./CONTRIBUTING.md) and contact the maintainers or open an issue to collect feedbacks before starting your PR.
 
 These implementations have been tested on several datasets (see the example scripts) and should match the performances of the original implementations. You can find more details on the performances in the Examples section of the [documentation](https://huggingface.co/transformers/examples.html).
 

codecov.yml

@@ -4,7 +4,4 @@ coverage:
       default:
         informational: true
     patch: off
-comment:
-  require_changes: true    # only comment if there was change in coverage
-  require_head: yes        # don't report if there is no head coverage report
-  require_base: yes        # don't report if there is no base coverage report
+comment: false

docker/transformers-gpu/Dockerfile

@@ -1,4 +1,4 @@
-FROM nvidia/cuda:10.1-cudnn7-runtime-ubuntu18.04
+FROM nvidia/cuda:10.2-cudnn7-devel-ubuntu18.04
 LABEL maintainer="Hugging Face"
 LABEL repository="transformers"
 
@@ -18,9 +18,14 @@ RUN python3 -m pip install --no-cache-dir --upgrade pip && \
     tensorflow \
     torch
 
+RUN git clone https://github.com/NVIDIA/apex
+RUN cd apex && \
+    python3 setup.py install && \
+    pip install -v --no-cache-dir --global-option="--cpp_ext" --global-option="--cuda_ext" ./
+
 WORKDIR /workspace
 COPY . transformers/
 RUN cd transformers/ && \
     python3 -m pip install --no-cache-dir .
 
-CMD ["/bin/bash"]
+CMD ["/bin/bash"]

docker/transformers-pytorch-gpu/Dockerfile

@@ -1,4 +1,4 @@
-FROM nvidia/cuda:10.1-cudnn7-runtime-ubuntu18.04
+FROM nvidia/cuda:10.2-cudnn7-devel-ubuntu18.04
 LABEL maintainer="Hugging Face"
 LABEL repository="transformers"
 
@@ -17,9 +17,14 @@ RUN python3 -m pip install --no-cache-dir --upgrade pip && \
     mkl \
     torch
 
+RUN git clone https://github.com/NVIDIA/apex
+RUN cd apex && \
+    python3 setup.py install && \
+    pip install -v --no-cache-dir --global-option="--cpp_ext" --global-option="--cuda_ext" ./
+
 WORKDIR /workspace
 COPY . transformers/
 RUN cd transformers/ && \
     python3 -m pip install --no-cache-dir .
 
-CMD ["/bin/bash"]
+CMD ["/bin/bash"]

docs/source/_static/css/huggingface.css

@@ -125,6 +125,12 @@ a.copybtn {
     background-color: #6670FF;
 }
 
+/* The section headers in the toc tree */
+.wy-menu-vertical p.caption{
+    background-color: #4d59ff;
+    line-height: 40px;
+}
+
 /* The selected items in the toc tree */
 .wy-menu-vertical li.current{
     background-color: #A6B0FF;

docs/source/_static/js/custom.js

@@ -1,10 +1,11 @@
 // These two things need to be updated at each release for the version selector.
 // Last stable version
-const stableVersion = "v3.2.0"
+const stableVersion = "v3.3.0"
 // Dictionary doc folder to label
 const versionMapping = {
     "master": "master",
-    "": "v3.2.0",
+    "": "v3.3.0/v3.3.1",
+    "v3.2.0": "v3.2.0",
     "v3.1.0": "v3.1.0 (stable)",
     "v3.0.2": "v3.0.0/v3.0.1/v3.0.2",
     "v2.11.0": "v2.11.0",
@@ -235,9 +236,11 @@ function platformToggle() {
 
     const createFrameworkButtons = sample => {
             const pytorchButton = document.createElement("button");
+            pytorchButton.classList.add('pytorch-button')
             pytorchButton.innerText = "PyTorch";
 
             const tensorflowButton = document.createElement("button");
+            tensorflowButton.classList.add('tensorflow-button')
             tensorflowButton.innerText = "TensorFlow";
 
             const selectorDiv = document.createElement("div");
@@ -252,22 +255,36 @@ function platformToggle() {
             tensorflowButton.classList.remove("selected");
 
             pytorchButton.addEventListener("click", () => {
-                sample.element.innerHTML = sample.pytorchSample;
-                pytorchButton.classList.add("selected");
-                tensorflowButton.classList.remove("selected");
+                for(const codeBlock of updatedCodeBlocks){
+                    codeBlock.element.innerHTML = codeBlock.pytorchSample;
+                }
+                Array.from(document.getElementsByClassName('pytorch-button')).forEach(button => {
+                    button.classList.add("selected");
+                })
+                Array.from(document.getElementsByClassName('tensorflow-button')).forEach(button => {
+                    button.classList.remove("selected");
+                })
             });
             tensorflowButton.addEventListener("click", () => {
-               sample.element.innerHTML = sample.tensorflowSample;
-                tensorflowButton.classList.add("selected");
-                pytorchButton.classList.remove("selected");
+                for(const codeBlock of updatedCodeBlocks){
+                    codeBlock.element.innerHTML = codeBlock.tensorflowSample;
+                }
+                Array.from(document.getElementsByClassName('tensorflow-button')).forEach(button => {
+                    button.classList.add("selected");
+                })
+                Array.from(document.getElementsByClassName('pytorch-button')).forEach(button => {
+                    button.classList.remove("selected");
+                })
             });
         };
 
-    codeBlocks
+    const updatedCodeBlocks = codeBlocks
         .map(element => {return {element: element.firstChild, innerText: element.innerText}})
         .filter(codeBlock => codeBlock.innerText.includes(pytorchIdentifier) && codeBlock.innerText.includes(tensorflowIdentifier))
         .map(getFrameworkSpans)
-        .forEach(createFrameworkButtons);
+
+    updatedCodeBlocks
+        .forEach(createFrameworkButtons)
 }
 
 

docs/source/conf.py

@@ -26,7 +26,7 @@ author = u'huggingface'
 # The short X.Y version
 version = u''
 # The full version, including alpha/beta/rc tags
-release = u'3.2.0'
+release = u'3.3.1'
 
 
 # -- General configuration ---------------------------------------------------

docs/source/index.rst

@@ -46,102 +46,116 @@ The documentation is organized in five parts:
 - **ADVANCED GUIDES** contains more advanced guides that are more specific to a given script or part of the library.
 - **RESEARCH** focuses on tutorials that have less to do with how to use the library but more about general resarch in
   transformers model
-- **PACKAGE REFERENCE** contains the documentation of each public class and function.
+- The three last section contain the documentation of each public class and function, grouped in:
+    - **MAIN CLASSES** for the main classes exposing the important APIs of the library.
+    - **MODELS** for the classes and functions related to each model implemented in the library.
+    - **INTERNAL HELPERS** for the classes and functions we use internally.
 
 The library currently contains PyTorch and Tensorflow implementations, pre-trained model weights, usage scripts and
 conversion utilities for the following models:
 
-1. `BERT <https://github.com/google-research/bert>`_ (from Google) released with the paper `BERT: Pre-training of Deep
-   Bidirectional Transformers for Language Understanding <https://arxiv.org/abs/1810.04805>`_ by Jacob Devlin, Ming-Wei
-   Chang, Kenton Lee, and Kristina Toutanova.
-2. `GPT <https://github.com/openai/finetune-transformer-lm>`_ (from OpenAI) released with the paper `Improving Language
-   Understanding by Generative Pre-Training <https://blog.openai.com/language-unsupervised>`_ by Alec Radford, Karthik
-   Narasimhan, Tim Salimans, and Ilya Sutskever.
-3. `GPT-2 <https://blog.openai.com/better-language-models>`_ (from OpenAI) released with the paper `Language Models are
-   Unsupervised Multitask Learners <https://blog.openai.com/better-language-models>`_ by Alec Radford, Jeffrey Wu,
-   Rewon Child, David Luan, Dario Amodei, and Ilya Sutskever.
-4. `Transformer-XL <https://github.com/kimiyoung/transformer-xl>`_ (from Google/CMU) released with the paper
-   `Transformer-XL: Attentive Language Models Beyond a Fixed-Length Context <https://arxiv.org/abs/1901.02860>`_ by
-   Zihang Dai, Zhilin Yang, Yiming Yang, Jaime Carbonell, Quoc V. Le, and Ruslan Salakhutdinov.
-5. `XLNet <https://github.com/zihangdai/xlnet>`_ (from Google/CMU) released with the paper `​XLNet: Generalized
-   Autoregressive Pretraining for Language Understanding <https://arxiv.org/abs/1906.08237>`_ by Zhilin Yang, Zihang
-   Dai, Yiming Yang, Jaime Carbonell, Ruslan Salakhutdinov, and Quoc V. Le.
-6. `XLM <https://github.com/facebookresearch/XLM>`_ (from Facebook) released together with the paper `Cross-lingual
-   Language Model Pretraining <https://arxiv.org/abs/1901.07291>`_ by Guillaume Lample and Alexis Conneau.
-7. `RoBERTa <https://github.com/pytorch/fairseq/tree/master/examples/roberta>`_ (from Facebook), released together with
-   the paper a `Robustly Optimized BERT Pretraining Approach <https://arxiv.org/abs/1907.11692>`_ by Yinhan Liu, Myle
-   Ott, Naman Goyal, Jingfei Du, Mandar Joshi, Danqi Chen, Omer Levy, Mike Lewis, Luke Zettlemoyer, and Veselin
-   Stoyanov.
-8. `DistilBERT <https://huggingface.co/transformers/model_doc/distilbert.html>`_ (from HuggingFace) released together
-   with the paper `DistilBERT, a distilled version of BERT: smaller, faster, cheaper and lighter
-   <https://arxiv.org/abs/1910.01108>`_ by Victor Sanh, Lysandre Debut, and Thomas Wolf. The same method has been
-   applied to compress GPT2 into
-   `DistilGPT2 <https://github.com/huggingface/transformers/tree/master/examples/distillation>`_.
-9. `CTRL <https://github.com/pytorch/fairseq/tree/master/examples/ctrl>`_ (from Salesforce), released together with the
-   paper `CTRL: A Conditional Transformer Language Model for Controllable Generation
-   <https://www.github.com/salesforce/ctrl>`_ by Nitish Shirish Keskar, Bryan McCann, Lav R. Varshney, Caiming Xiong,
-   and Richard Socher.
-10. `CamemBERT <https://huggingface.co/transformers/model_doc/camembert.html>`_ (from FAIR, Inria, Sorbonne Université)
-    released together with the paper `CamemBERT: a Tasty French Language Model <https://arxiv.org/abs/1911.03894>`_ by
-    Louis Martin, Benjamin Muller, Pedro Javier Ortiz Suarez, Yoann Dupont, Laurent Romary, Eric Villemonte de la
-    Clergerie, Djame Seddah, and Benoît Sagot.
-11. `ALBERT <https://github.com/google-research/ALBERT>`_ (from Google Research), released together with the paper
-    `ALBERT: A Lite BERT for Self-supervised Learning of Language Representations <https://arxiv.org/abs/1909.11942>`_
-    by Zhenzhong Lan, Mingda Chen, Sebastian Goodman, Kevin Gimpel, Piyush Sharma, and Radu Soricut.
-12. `T5 <https://github.com/google-research/text-to-text-transfer-transformer>`_ (from Google) released with the paper
-    `Exploring the Limits of Transfer Learning with a Unified Text-to-Text Transformer
-    <https://arxiv.org/abs/1910.10683>`_ by Colin Raffel, Noam Shazeer, Adam Roberts, Katherine Lee, Sharan Narang,
-    Michael Matena, Yanqi Zhou, Wei Li, and Peter J. Liu.
-13. `XLM-RoBERTa <https://github.com/pytorch/fairseq/tree/master/examples/xlmr>`_ (from Facebook AI), released together
-    with the paper `Unsupervised Cross-lingual Representation Learning at Scale <https://arxiv.org/abs/1911.02116>`_ by
-    Alexis Conneau, Kartikay Khandelwal, Naman Goyal, Vishrav Chaudhary, Guillaume Wenzek, Francisco Guzmán, Edouard
-    Grave, Myle Ott, Luke Zettlemoyer, and Veselin Stoyanov.
-14. `MMBT <https://github.com/facebookresearch/mmbt/>`_ (from Facebook), released together with the paper a `Supervised
-    Multimodal Bitransformers for Classifying Images and Text <https://arxiv.org/pdf/1909.02950.pdf>`_ by Douwe Kiela,
-    Suvrat Bhooshan, Hamed Firooz, and Davide Testuggine.
-15. `FlauBERT <https://github.com/getalp/Flaubert>`_ (from CNRS) released with the paper `FlauBERT: Unsupervised
-    Language Model Pre-training for French <https://arxiv.org/abs/1912.05372>`_ by Hang Le, Loïc Vial, Jibril Frej,
-    Vincent Segonne, Maximin Coavoux, Benjamin Lecouteux, Alexandre Allauzen, Benoît Crabbé, Laurent Besacier, and
-    Didier Schwab.
-16. `BART <https://github.com/pytorch/fairseq/tree/master/examples/bart>`_ (from Facebook) released with the paper
-    `BART: Denoising Sequence-to-Sequence Pre-training for Natural Language Generation, Translation, and Comprehension
-    <https://arxiv.org/pdf/1910.13461.pdf>`_ by Mike Lewis, Yinhan Liu, Naman Goyal, Marjan Ghazvininejad, Abdelrahman
-    Mohamed, Omer Levy, Ves Stoyanov, and Luke Zettlemoyer.
-17. `ELECTRA <https://github.com/google-research/electra>`_ (from Google Research/Stanford University) released with
-    the paper `ELECTRA: Pre-training text encoders as discriminators rather than generators
-    <https://arxiv.org/abs/2003.10555>`_ by Kevin Clark, Minh-Thang Luong, Quoc V. Le, and Christopher D. Manning.
-18. `DialoGPT <https://github.com/microsoft/DialoGPT>`_ (from Microsoft Research) released with the paper `DialoGPT:
-    Large-Scale Generative Pre-training for Conversational Response Generation <https://arxiv.org/abs/1911.00536>`_ by
-    Yizhe Zhang, Siqi Sun, Michel Galley, Yen-Chun Chen, Chris Brockett, Xiang Gao, Jianfeng Gao, Jingjing Liu,
-    and Bill Dolan.
-19. `Reformer <https://github.com/google/trax/tree/master/trax/models/reformer>`_ (from Google Research) released with
-    the paper `Reformer: The Efficient Transformer <https://arxiv.org/abs/2001.04451>`_ by Nikita Kitaev, Łukasz
-    Kaiser, and Anselm Levskaya.
-20. `MarianMT <https://marian-nmt.github.io/>`_ (developed by the Microsoft Translator Team) machine translation models
-    trained using `OPUS <http://opus.nlpl.eu/>`_ pretrained_models data by Jörg Tiedemann.
-21. `Longformer <https://github.com/allenai/longformer>`_ (from AllenAI) released with the paper `Longformer: The
-    Long-Document Transformer <https://arxiv.org/abs/2004.05150>`_ by Iz Beltagy, Matthew E. Peters, and Arman Cohan.
-22. `DPR <https://github.com/facebookresearch/DPR>`_ (from Facebook) released with the paper `Dense Passage Retrieval
-    for Open-Domain Question Answering <https://arxiv.org/abs/2004.04906>`_ by Vladimir Karpukhin, Barlas Oğuz, Sewon
-    Min, Patrick Lewis, Ledell Wu, Sergey Edunov, Danqi Chen, and Wen-tau Yih.
-23. `Pegasus <https://github.com/google-research/pegasus>`_ (from Google) released with the paper `PEGASUS: Pre-training with Extracted Gap-sentences for Abstractive Summarization
-    <https://arxiv.org/abs/1912.08777>`_ by Jingqing Zhang, Yao Zhao, Mohammad Saleh and Peter J. Liu.
-24. `MBart <https://github.com/pytorch/fairseq/tree/master/examples/mbart>`_ (from Facebook) released with the paper  `Multilingual Denoising Pre-training for Neural Machine Translation <https://arxiv.org/abs/2001.08210>`_ by Yinhan Liu, Jiatao Gu, Naman Goyal, Xian Li, Sergey Edunov,
-    Marjan Ghazvininejad, Mike Lewis, Luke Zettlemoyer.
-25. `LXMERT <https://github.com/airsplay/lxmert>`_ (from UNC Chapel Hill) released with the paper `LXMERT: Learning
-    Cross-Modality Encoder Representations from Transformers for Open-Domain Question
-    Answering <https://arxiv.org/abs/1908.07490>`_ by Hao Tan and Mohit Bansal.
-26. `Funnel Transformer <https://github.com/laiguokun/Funnel-Transformer>`_ (from CMU/Google Brain) released with the paper
-    `Funnel-Transformer: Filtering out Sequential Redundancy for Efficient Language Processing
-    <https://arxiv.org/abs/2006.03236>`_ by Zihang Dai, Guokun Lai, Yiming Yang, Quoc V. Le.
-27. `Bert For Sequence Generation <https://tfhub.dev/s?module-type=text-generation&subtype=module,placeholder>`_ (from Google) released with the paper
-    `Leveraging Pre-trained Checkpoints for Sequence Generation Tasks
-    <https://arxiv.org/abs/1907.12461>`_ by Sascha Rothe, Shashi Narayan, Aliaksei Severyn.
-28. `LayoutLM <https://github.com/microsoft/unilm/tree/master/layoutlm>`_ (from Microsoft Research Asia) released with the paper
-    `LayoutLM: Pre-training of Text and Layout for Document Image Understanding
-    <https://arxiv.org/abs/1912.13318>`_ by Yiheng Xu, Minghao Li, Lei Cui, Shaohan Huang, Furu Wei, Ming Zhou.
-29. `Other community models <https://huggingface.co/models>`_, contributed by the `community
-    <https://huggingface.co/users>`_.
+..
+    This list is updated automatically from the README with `make fix-copies`. Do not update manually!
+
+1. :doc:`ALBERT <model_doc/albert>` (from Google Research and the Toyota Technological Institute at Chicago) released
+   with the paper `ALBERT: A Lite BERT for Self-supervised Learning of Language Representations
+   <https://arxiv.org/abs/1909.11942>`__, by Zhenzhong Lan, Mingda Chen, Sebastian Goodman, Kevin Gimpel, Piyush
+   Sharma, Radu Soricut.
+2. :doc:`BART <model_doc/bart>` (from Facebook) released with the paper `BART: Denoising Sequence-to-Sequence
+   Pre-training for Natural Language Generation, Translation, and Comprehension
+   <https://arxiv.org/pdf/1910.13461.pdf>`__ by Mike Lewis, Yinhan Liu, Naman Goyal, Marjan Ghazvininejad, Abdelrahman
+   Mohamed, Omer Levy, Ves Stoyanov and Luke Zettlemoyer.
+3. :doc:`BERT <model_doc/bert>` (from Google) released with the paper `BERT: Pre-training of Deep Bidirectional
+   Transformers for Language Understanding <https://arxiv.org/abs/1810.04805>`__ by Jacob Devlin, Ming-Wei Chang,
+   Kenton Lee and Kristina Toutanova.
+4. :doc:`BERT For Sequence Generation <model_doc/bertgeneration>` (from Google) released with the paper `Leveraging
+   Pre-trained Checkpoints for Sequence Generation Tasks <https://arxiv.org/abs/1907.12461>`__ by Sascha Rothe, Shashi
+   Narayan, Aliaksei Severyn.
+5. `Blenderbot <https://huggingface.co/transformers/master/model_doc/blenderbot.html>`__ (from Facebook) released with
+   the paper `Recipes for building an open-domain chatbot <https://arxiv.org/abs/2004.13637>`__ by Stephen Roller,
+   Emily Dinan, Naman Goyal, Da Ju, Mary Williamson, Yinhan Liu, Jing Xu, Myle Ott, Kurt Shuster, Eric M. Smith, Y-Lan
+   Boureau, Jason Weston.
+6. :doc:`CamemBERT <model_doc/camembert>` (from Inria/Facebook/Sorbonne) released with the paper `CamemBERT: a Tasty
+   French Language Model <https://arxiv.org/abs/1911.03894>`__ by Louis Martin*, Benjamin Muller*, Pedro Javier Ortiz
+   Suárez*, Yoann Dupont, Laurent Romary, Éric Villemonte de la Clergerie, Djamé Seddah and Benoît Sagot.
+7. :doc:`CTRL <model_doc/ctrl>` (from Salesforce) released with the paper `CTRL: A Conditional Transformer Language
+   Model for Controllable Generation <https://arxiv.org/abs/1909.05858>`__ by Nitish Shirish Keskar*, Bryan McCann*,
+   Lav R. Varshney, Caiming Xiong and Richard Socher.
+8. `DeBERTa <https://huggingface.co/transformers/master/model_doc/deberta.html>`__ (from Microsoft Research) released
+   with the paper `DeBERTa: Decoding-enhanced BERT with Disentangled Attention <https://arxiv.org/abs/2006.03654>`__ by
+   Pengcheng He, Xiaodong Liu, Jianfeng Gao, Weizhu Chen.
+9. :doc:`DialoGPT <model_doc/dialogpt>` (from Microsoft Research) released with the paper `DialoGPT: Large-Scale
+   Generative Pre-training for Conversational Response Generation <https://arxiv.org/abs/1911.00536>`__ by Yizhe Zhang,
+   Siqi Sun, Michel Galley, Yen-Chun Chen, Chris Brockett, Xiang Gao, Jianfeng Gao, Jingjing Liu, Bill Dolan.
+10. :doc:`DistilBERT <model_doc/distilbert>` (from HuggingFace), released together with the paper `DistilBERT, a
+    distilled version of BERT: smaller, faster, cheaper and lighter <https://arxiv.org/abs/1910.01108>`__ by Victor
+    Sanh, Lysandre Debut and Thomas Wolf. The same method has been applied to compress GPT2 into `DistilGPT2
+    <https://github.com/huggingface/transformers/tree/master/examples/distillation>`__, RoBERTa into `DistilRoBERTa
+    <https://github.com/huggingface/transformers/tree/master/examples/distillation>`__, Multilingual BERT into
+    `DistilmBERT <https://github.com/huggingface/transformers/tree/master/examples/distillation>`__ and a German
+    version of DistilBERT.
+11. :doc:`DPR <model_doc/dpr>` (from Facebook) released with the paper `Dense Passage Retrieval for Open-Domain
+    Question Answering <https://arxiv.org/abs/2004.04906>`__ by Vladimir Karpukhin, Barlas Oğuz, Sewon Min, Patrick
+    Lewis, Ledell Wu, Sergey Edunov, Danqi Chen, and Wen-tau Yih.
+12. :doc:`ELECTRA <model_doc/electra>` (from Google Research/Stanford University) released with the paper `ELECTRA:
+    Pre-training text encoders as discriminators rather than generators <https://arxiv.org/abs/2003.10555>`__ by Kevin
+    Clark, Minh-Thang Luong, Quoc V. Le, Christopher D. Manning.
+13. :doc:`FlauBERT <model_doc/flaubert>` (from CNRS) released with the paper `FlauBERT: Unsupervised Language Model
+    Pre-training for French <https://arxiv.org/abs/1912.05372>`__ by Hang Le, Loïc Vial, Jibril Frej, Vincent Segonne,
+    Maximin Coavoux, Benjamin Lecouteux, Alexandre Allauzen, Benoît Crabbé, Laurent Besacier, Didier Schwab.
+14. :doc:`Funnel Transformer <model_doc/funnel>` (from CMU/Google Brain) released with the paper `Funnel-Transformer:
+    Filtering out Sequential Redundancy for Efficient Language Processing <https://arxiv.org/abs/2006.03236>`__ by
+    Zihang Dai, Guokun Lai, Yiming Yang, Quoc V. Le.
+15. :doc:`GPT <model_doc/gpt>` (from OpenAI) released with the paper `Improving Language Understanding by Generative
+    Pre-Training <https://blog.openai.com/language-unsupervised/>`__ by Alec Radford, Karthik Narasimhan, Tim Salimans
+    and Ilya Sutskever.
+16. :doc:`GPT-2 <model_doc/gpt2>` (from OpenAI) released with the paper `Language Models are Unsupervised Multitask
+    Learners <https://blog.openai.com/better-language-models/>`__ by Alec Radford*, Jeffrey Wu*, Rewon Child, David
+    Luan, Dario Amodei** and Ilya Sutskever**.
+17. :doc:`LayoutLM <model_doc/layoutlm>` (from Microsoft Research Asia) released with the paper `LayoutLM: Pre-training
+    of Text and Layout for Document Image Understanding <https://arxiv.org/abs/1912.13318>`__ by Yiheng Xu, Minghao Li,
+    Lei Cui, Shaohan Huang, Furu Wei, Ming Zhou.
+18. :doc:`Longformer <model_doc/longformer>` (from AllenAI) released with the paper `Longformer: The Long-Document
+    Transformer <https://arxiv.org/abs/2004.05150>`__ by Iz Beltagy, Matthew E. Peters, Arman Cohan.
+19. :doc:`LXMERT <model_doc/lxmert>` (from UNC Chapel Hill) released with the paper `LXMERT: Learning Cross-Modality
+    Encoder Representations from Transformers for Open-Domain Question Answering <https://arxiv.org/abs/1908.07490>`__
+    by Hao Tan and Mohit Bansal.
+20. :doc:`MarianMT <model_doc/marian>` Machine translation models trained using `OPUS <http://opus.nlpl.eu/>`__ data by
+    Jörg Tiedemann. The `Marian Framework <https://marian-nmt.github.io/>`__ is being developed by the Microsoft
+    Translator Team.
+21. :doc:`MBart <model_doc/mbart>` (from Facebook) released with the paper  `Multilingual Denoising Pre-training for
+    Neural Machine Translation <https://arxiv.org/abs/2001.08210>`__ by Yinhan Liu, Jiatao Gu, Naman Goyal, Xian Li,
+    Sergey Edunov, Marjan Ghazvininejad, Mike Lewis, Luke Zettlemoyer.
+22. :doc:`Pegasus <model_doc/pegasus>` (from Google) released with the paper `PEGASUS: Pre-training with Extracted
+    Gap-sentences for Abstractive Summarization <https://arxiv.org/abs/1912.08777>`__> by Jingqing Zhang, Yao Zhao,
+    Mohammad Saleh and Peter J. Liu.
+23. :doc:`Reformer <model_doc/reformer>` (from Google Research) released with the paper `Reformer: The Efficient
+    Transformer <https://arxiv.org/abs/2001.04451>`__ by Nikita Kitaev, Łukasz Kaiser, Anselm Levskaya.
+24. :doc:`RoBERTa <model_doc/roberta>` (from Facebook), released together with the paper a `Robustly Optimized BERT
+    Pretraining Approach <https://arxiv.org/abs/1907.11692>`__ by Yinhan Liu, Myle Ott, Naman Goyal, Jingfei Du, Mandar
+    Joshi, Danqi Chen, Omer Levy, Mike Lewis, Luke Zettlemoyer, Veselin Stoyanov. ultilingual BERT into `DistilmBERT
+    <https://github.com/huggingface/transformers/tree/master/examples/distillation>`__ and a German version of
+    DistilBERT.
+25. `SqueezeBert <https://huggingface.co/transformers/master/model_doc/squeezebert.html>`__ released with the paper
+    `SqueezeBERT: What can computer vision teach NLP about efficient neural networks?
+    <https://arxiv.org/abs/2006.11316>`__ by Forrest N. Iandola, Albert E. Shaw, Ravi Krishna, and Kurt W. Keutzer.
+26. :doc:`T5 <model_doc/t5>` (from Google AI) released with the paper `Exploring the Limits of Transfer Learning with a
+    Unified Text-to-Text Transformer <https://arxiv.org/abs/1910.10683>`__ by Colin Raffel and Noam Shazeer and Adam
+    Roberts and Katherine Lee and Sharan Narang and Michael Matena and Yanqi Zhou and Wei Li and Peter J. Liu.
+27. :doc:`Transformer-XL <model_doc/transformerxl>` (from Google/CMU) released with the paper `Transformer-XL:
+    Attentive Language Models Beyond a Fixed-Length Context <https://arxiv.org/abs/1901.02860>`__ by Zihang Dai*,
+    Zhilin Yang*, Yiming Yang, Jaime Carbonell, Quoc V. Le, Ruslan Salakhutdinov.
+28. :doc:`XLM <model_doc/xlm>` (from Facebook) released together with the paper `Cross-lingual Language Model
+    Pretraining <https://arxiv.org/abs/1901.07291>`__ by Guillaume Lample and Alexis Conneau.
+29. :doc:`XLM-RoBERTa <model_doc/xlmroberta>` (from Facebook AI), released together with the paper `Unsupervised
+    Cross-lingual Representation Learning at Scale <https://arxiv.org/abs/1911.02116>`__ by Alexis Conneau*, Kartikay
+    Khandelwal*, Naman Goyal, Vishrav Chaudhary, Guillaume Wenzek, Francisco Guzmán, Edouard Grave, Myle Ott, Luke
+    Zettlemoyer and Veselin Stoyanov.
+30. :doc:`XLNet <model_doc/xlnet>` (from Google/CMU) released with the paper `​XLNet: Generalized Autoregressive
+    Pretraining for Language Understanding <https://arxiv.org/abs/1906.08237>`__ by Zhilin Yang*, Zihang Dai*, Yiming
+    Yang, Jaime Carbonell, Ruslan Salakhutdinov, Quoc V. Le.
+31. `Other community models <https://huggingface.co/models>`__, contributed by the `community
+    <https://huggingface.co/users>`__.
 
 .. toctree::
     :maxdepth: 2
@@ -188,50 +202,65 @@ conversion utilities for the following models:
 
 .. toctree::
     :maxdepth: 2
-    :caption: Package Reference
+    :caption: Main Classes
 
+    main_classes/callback
     main_classes/configuration
-    main_classes/output
-    main_classes/model
-    main_classes/tokenizer
-    main_classes/pipelines
-    main_classes/trainer
-    main_classes/optimizer_schedules
-    main_classes/processors
     main_classes/logging
-    model_doc/auto
-    model_doc/encoderdecoder
-    model_doc/bert
-    model_doc/gpt
-    model_doc/transformerxl
-    model_doc/gpt2
-    model_doc/xlm
-    model_doc/xlnet
-    model_doc/roberta
-    model_doc/distilbert
-    model_doc/ctrl
-    model_doc/camembert
+    main_classes/model
+    main_classes/optimizer_schedules
+    main_classes/output
+    main_classes/pipelines
+    main_classes/processors
+    main_classes/tokenizer
+    main_classes/trainer
+
+.. toctree::
+    :maxdepth: 2
+    :caption: Models
+
     model_doc/albert
-    model_doc/xlmroberta
-    model_doc/flaubert
+    model_doc/auto
     model_doc/bart
-    model_doc/t5
-    model_doc/electra
+    model_doc/bert
+    model_doc/bertgeneration
+    model_doc/blenderbot
+    model_doc/camembert
+    model_doc/ctrl
+    model_doc/deberta
     model_doc/dialogpt
-    model_doc/reformer
-    model_doc/marian
-    model_doc/longformer
-    model_doc/retribert
-    model_doc/mobilebert
+    model_doc/distilbert
     model_doc/dpr
-    model_doc/pegasus
-    model_doc/mbart
+    model_doc/electra
+    model_doc/encoderdecoder
+    model_doc/flaubert
     model_doc/fsmt
     model_doc/funnel
-    model_doc/lxmert
-    model_doc/bertgeneration
     model_doc/layoutlm
+    model_doc/longformer
+    model_doc/lxmert
+    model_doc/marian
+    model_doc/mbart
+    model_doc/mobilebert
+    model_doc/gpt
+    model_doc/gpt2
+    model_doc/pegasus
     model_doc/rag
+    model_doc/reformer
+    model_doc/retribert
+    model_doc/roberta
+    model_doc/squeezebert
+    model_doc/t5
+    model_doc/transformerxl
+    model_doc/xlm
+    model_doc/xlmroberta
+    model_doc/xlnet
+
+.. toctree::
+    :maxdepth: 2
+    :caption: Internal Helpers
+
     internal/modeling_utils
-    internal/tokenization_utils
     internal/pipelines_utils
+    internal/tokenization_utils
+    internal/trainer_utils

docs/source/installation.md

@@ -37,13 +37,13 @@ pip install transformers[tf-cpu]
 To check 🤗 Transformers is properly installed, run the following command:
 
 ```bash
-python -c "from transformers import pipeline; print(pipeline('sentiment-analysis')('I hate you'))"
+python -c "from transformers import pipeline; print(pipeline('sentiment-analysis')('we love you'))"
 ```
 
 It should download a pretrained model then print something like
 
 ```bash
-[{'label': 'NEGATIVE', 'score': 0.9991129040718079}]
+[{'label': 'POSITIVE', 'score': 0.9998704791069031}]
 ```
 
 (Note that TensorFlow will print additional stuff before that last statement.)

docs/source/internal/trainer_utils.rst

@@ -0,0 +1,21 @@
+Utilities for Trainer
+-----------------------------------------------------------------------------------------------------------------------
+
+This page lists all the utility functions used by :class:`~transformers.Trainer`.
+
+Most of those are only useful if you are studying the code of the Trainer in the library.
+
+Utilities
+~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+
+.. autoclass:: transformers.EvalPrediction
+
+.. autofunction:: transformers.set_seed
+
+.. autofunction:: transformers.torch_distributed_zero_first
+
+
+Callbacks internals
+~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+
+.. autoclass:: transformers.trainer_callback.CallbackHandler

docs/source/main_classes/callback.rst

@@ -0,0 +1,68 @@
+Callbacks
+-----------------------------------------------------------------------------------------------------------------------
+
+Callbacks are objects that can customize the behavior of the training loop in the PyTorch
+:class:`~transformers.Trainer` (this feature is not yet implemented in TensorFlow) that can inspect the training loop
+state (for progress reporting, logging on TensorBoard or other ML platforms...) and take decisions (like early
+stopping).
+
+Callbacks are "read only" pieces of code, apart from the :class:`~transformers.TrainerControl` object they return, they
+cannot change anything in the training loop. For customizations that require changes in the training loop, you should
+subclass :class:`~transformers.Trainer` and override the methods you need (see :doc:`trainer` for examples).
+
+By default a :class:`~transformers.Trainer` will use the following callbacks:
+
+- :class:`~transformers.DefaultFlowCallback` which handles the default beahvior for logging, saving and evaluation.
+- :class:`~transformers.PrinterCallback` or :class:`~transformers.ProrgressCallback` to display progress and print the
+  logs (the first one is used if you deactivate tqdm through the :class:`~transformers.TrainingArguments`, otherwise
+  it's the second one).
+- :class:`~transformers.integrations.TensorBoardCallback` if tensorboard is accessible (either through PyTorch >= 1.4
+  or tensorboardX).
+- :class:`~transformers.integrations.WandbCallback` if `wandb <https://www.wandb.com/>`__ is installed.
+- :class:`~transformers.integrations.CometCallback` if `comet_ml <https://www.comet.ml/site/>`__ is installed.
+
+The main class that implements callbacks is :class:`~transformers.TrainerCallback`. It gets the
+:class:`~transformers.TrainingArguments` used to instantiate the :class:`~transformers.Trainer`, can access that
+Trainer's internal state via :class:`~transformers.TrainerState`, and can take some actions on the training loop via
+:class:`~transformers.TrainerControl`.
+
+
+Available Callbacks
+~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+
+Here is the list of the available :class:`~transformers.TrainerCallback` in the library:
+
+.. autoclass:: transformers.integrations.CometCallback
+    :members: setup
+
+.. autoclass:: transformers.DefaultFlowCallback
+
+.. autoclass:: transformers.PrinterCallback
+
+.. autoclass:: transformers.ProgressCallback
+
+.. autoclass:: transformers.integrations.TensorBoardCallback
+
+.. autoclass:: transformers.integrations.WandbCallback
+    :members: setup
+
+
+TrainerCallback
+~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+
+.. autoclass:: transformers.TrainerCallback
+    :members:
+
+
+TrainerState
+~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+
+.. autoclass:: transformers.TrainerState
+    :members:
+
+
+TrainerControl
+~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+
+.. autoclass:: transformers.TrainerControl
+    :members:

docs/source/main_classes/logging.rst

@@ -52,3 +52,7 @@ Other functions
 .. autofunction:: transformers.logging.set_verbosity
 
 .. autofunction:: transformers.logging.get_logger
+
+.. autofunction:: transformers.logging.enable_explicit_format
+
+.. autofunction:: transformers.logging.reset_format

docs/source/main_classes/trainer.rst

@@ -18,7 +18,6 @@ previous features. To inject custom behavior you can subclass them and override
 - **get_eval_dataloader**/**get_eval_tfdataset** -- Creates the evaulation DataLoader (PyTorch) or TF Dataset.
 - **get_test_dataloader**/**get_test_tfdataset** -- Creates the test DataLoader (PyTorch) or TF Dataset.
 - **log** -- Logs information on the various objects watching training.
-- **setup_wandb** -- Setups wandb (see `here <https://docs.wandb.com/huggingface>`__ for more information).
 - **create_optimizer_and_scheduler** -- Setups the optimizer and learning rate scheduler if they were not passed at
   init.
 - **compute_loss** - Computes the loss on a batch of training inputs.
@@ -40,6 +39,10 @@ Here is an example of how to customize :class:`~transformers.Trainer` using a cu
             logits = outputs[0]
             return my_custom_loss(logits, labels)
 
+Another way to customize the training loop behavior for the PyTorch :class:`~transformers.Trainer` is to use
+:doc:`callbacks <callback>` that can inspect the training loop state (for progress reporting, logging on TensorBoard or
+other ML platforms...) and take decisions (like early stopping).
+
 
 Trainer
 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
@@ -47,29 +50,23 @@ Trainer
 .. autoclass:: transformers.Trainer
     :members:
 
+
 TFTrainer
 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 
 .. autoclass:: transformers.TFTrainer
     :members:
 
+
 TrainingArguments
 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 
 .. autoclass:: transformers.TrainingArguments
     :members:
 
+
 TFTrainingArguments
 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 
 .. autoclass:: transformers.TFTrainingArguments
     :members:
-
-Utilities
-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-
-.. autoclass:: transformers.EvalPrediction
-
-.. autofunction:: transformers.set_seed
-
-.. autofunction:: transformers.torch_distributed_zero_first

docs/source/model_doc/bart.rst

@@ -1,38 +1,46 @@
-Bart
+BART
 -----------------------------------------------------------------------------------------------------------------------
-**DISCLAIMER:** If you see something strange,
-file a `Github Issue <https://github.com/huggingface/transformers/issues/new?assignees=&labels=&template=bug-report.md&title>`__ and assign
+
+**DISCLAIMER:** If you see something strange, file a `Github Issue
+<https://github.com/huggingface/transformers/issues/new?assignees=&labels=&template=bug-report.md&title>`__ and assign
 @sshleifer
 
 Overview
 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 
-The Bart model was `proposed <https://arxiv.org/abs/1910.13461>`_ by Mike Lewis, Yinhan Liu, Naman Goyal, Marjan Ghazvininejad, Abdelrahman Mohamed, Omer Levy, Ves Stoyanov and Luke Zettlemoyer on 29 Oct, 2019.
+The Bart model was proposed in `BART: Denoising Sequence-to-Sequence Pre-training for Natural Language Generation,
+Translation, and Comprehension <https://arxiv.org/abs/1910.13461>`__ by Mike Lewis, Yinhan Liu, Naman Goyal, Marjan
+Ghazvininejad, Abdelrahman Mohamed, Omer Levy, Ves Stoyanov and Luke Zettlemoyer on 29 Oct, 2019.
+
 According to the abstract,
 
-- Bart uses a standard seq2seq/machine translation architecture with a bidirectional encoder (like BERT) and a left-to-right decoder (like GPT).
-- The pretraining task involves randomly shuffling the order of the original sentences and a novel in-filling scheme, where spans of text are replaced with a single mask token.
-- BART is particularly effective when fine tuned for text generation but also works well for comprehension tasks. It matches the performance of RoBERTa with comparable training resources on GLUE and SQuAD, achieves new state-of-the-art results on a range of abstractive dialogue, question answering, and summarization tasks, with gains of up to 6 ROUGE.
+- Bart uses a standard seq2seq/machine translation architecture with a bidirectional encoder (like BERT) and a
+  left-to-right decoder (like GPT).
+- The pretraining task involves randomly shuffling the order of the original sentences and a novel in-filling scheme,
+  where spans of text are replaced with a single mask token.
+- BART is particularly effective when fine tuned for text generation but also works well for comprehension tasks. It
+  matches the performance of RoBERTa with comparable training resources on GLUE and SQuAD, achieves new
+  state-of-the-art results on a range of abstractive dialogue, question answering, and summarization tasks, with gains
+  of up to 6 ROUGE.
 
-The Authors' code can be found `here <https://github.com/pytorch/fairseq/tree/master/examples/bart>`_
+The Authors' code can be found `here <https://github.com/pytorch/fairseq/tree/master/examples/bart>`__.
 
 
 Implementation Notes
 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 
-- Bart doesn't use :obj:`token_type_ids` for sequence classification. Use BartTokenizer.encode to get the proper splitting.
-- The forward pass of ``BartModel`` will create decoder inputs (using the helper function ``transformers.modeling_bart._prepare_bart_decoder_inputs``)  if they are not passed. This is different than some other modeling APIs.
-- Model predictions are intended to be identical to the original implementation. This only works, however, if the string you pass to ``fairseq.encode`` starts with a space.
-- ``BartForConditionalGeneration.generate`` should be used for conditional generation tasks like summarization, see the example in that docstrings
-- Models that load the ``"facebook/bart-large-cnn"`` weights will not have a ``mask_token_id``, or be able to perform mask filling tasks.
-- for training/forward passes that don't involve beam search, pass ``use_cache=False``
-
-
-BartForConditionalGeneration
-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-
-.. autoclass:: transformers.BartForConditionalGeneration
-    :members: forward
+- Bart doesn't use :obj:`token_type_ids` for sequence classification. Use :class:`~transformers.BartTokenizer` 
+  or :meth:`~transformers.BartTokenizer.encode` to get the proper splitting.
+- The forward pass of :class:`~transformers.BartModel` will create decoder inputs (using the helper function
+  :func:`transformers.modeling_bart._prepare_bart_decoder_inputs`)  if they are not passed. This is different than some
+  other modeling APIs.
+- Model predictions are intended to be identical to the original implementation. This only works, however, if the
+  string you pass to :func:`fairseq.encode` starts with a space.
+- :meth:`~transformers.BartForConditionalGeneration.generate` should be used for conditional generation tasks like
+  summarization, see the example in that docstrings.
+- Models that load the `facebook/bart-large-cnn` weights will not have a :obj:`mask_token_id`, or be able to perform
+  mask-filling tasks.
+- For training/forward passes that don't involve beam search, pass :obj:`use_cache=False`.
 
 
 BartConfig
@@ -59,6 +67,13 @@ BartModel
 .. autofunction:: transformers.modeling_bart._prepare_bart_decoder_inputs
 
 
+BartForConditionalGeneration
+~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+
+.. autoclass:: transformers.BartForConditionalGeneration
+    :members: forward
+
+
 BartForSequenceClassification
 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 
@@ -71,5 +86,3 @@ BartForQuestionAnswering
 
 .. autoclass:: transformers.BartForQuestionAnswering
     :members: forward
-
-

docs/source/model_doc/blenderbot.rst

@@ -0,0 +1,75 @@
+Blenderbot
+~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+**DISCLAIMER:** If you see something strange,
+file a `Github Issue <https://github.com/huggingface/transformers/issues/new?assignees=&labels=&template=bug-report.md&title>`__ .
+
+Overview
+~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+
+The Blender chatbot model was proposed in `Recipes for building an open-domain chatbot <https://arxiv.org/pdf/2004.13637.pdf>`__ Stephen Roller, Emily Dinan, Naman Goyal, Da Ju, Mary Williamson, Yinhan Liu, Jing Xu, Myle Ott, Kurt Shuster, Eric M. Smith, Y-Lan Boureau, Jason Weston on 30 Apr 2020.
+
+The abstract of the paper is the following:
+
+*Building open-domain chatbots is a challenging area for machine learning research. While prior work has shown that scaling neural models in the number of parameters and the size of the data they are trained on gives improved results, we show that other ingredients are important for a high-performing chatbot. Good conversation requires a number of skills that an expert conversationalist blends in a seamless way: providing engaging talking points and listening to their partners, and displaying knowledge, empathy and personality appropriately, while maintaining a consistent persona. We show that large scale models can learn these skills when given appropriate training data and choice of generation strategy. We build variants of these recipes with 90M, 2.7B and 9.4B parameter models, and make our models and code publicly available. Human evaluations show our best models are superior to existing approaches in multi-turn dialogue in terms of engagingness and humanness measurements. We then discuss the limitations of this work by analyzing failure cases of our models.*
+
+The authors' code can be found `here <https://github.com/facebookresearch/ParlAI>`__ .
+
+
+Implementation Notes
+~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+
+- Blenderbot uses a standard `seq2seq model transformer <https://arxiv.org/pdf/1706.03762.pdf>`__ based architecture.
+- It inherits completely from :class:`~transformers.BartForConditionalGeneration`
+- Even though blenderbot is one model, it uses two tokenizers :class:`~transformers.BlenderbotSmallTokenizer` for 90M checkpoint and :class:`~transformers.BlenderbotTokenizer` for all other checkpoints.
+- :class:`~transformers.BlenderbotSmallTokenizer` will always return :class:`~transformers.BlenderbotSmallTokenizer`, regardless of checkpoint. To use the 3B parameter checkpoint, you must call :class:`~transformers.BlenderbotTokenizer` directly.
+- Available checkpoints can be found in the `model hub <https://huggingface.co/models?search=blenderbot>`__.
+
+
+Usage
+~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+
+Model Usage:
+
+        >>> from transformers import BlenderbotSmallTokenizer, BlenderbotForConditionalGeneration
+        >>> mname = 'facebook/blenderbot-90M'
+        >>> model = BlenderbotForConditionalGeneration.from_pretrained(mname)
+        >>> tokenizer = BlenderbotSmallTokenizer.from_pretrained(mname)
+        >>> UTTERANCE = "My friends are cool but they eat too many carbs."
+        >>> inputs = tokenizer([UTTERANCE], return_tensors='pt')
+        >>> reply_ids = model.generate(**inputs)
+        >>> print([tokenizer.decode(g, skip_special_tokens=True, clean_up_tokenization_spaces=False) for g in reply_ids])
+
+
+See Config Values:
+
+        >>> from transformers import BlenderbotConfig
+        >>> config_90 = BlenderbotConfig.from_pretrained("facebook/blenderbot-90M")
+        >>> config_90.to_diff_dict()  # show interesting Values.
+        >>> configuration_3B = BlenderbotConfig("facebook/blenderbot-3B")
+        >>> configuration_3B.to_diff_dict()
+
+
+BlenderbotConfig
+~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+.. autoclass:: transformers.BlenderbotConfig
+    :members:
+
+BlenderbotTokenizer
+~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+
+.. autoclass:: transformers.BlenderbotTokenizer
+    :members: build_inputs_with_special_tokens
+
+BlenderbotSmallTokenizer
+~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+
+.. autoclass:: transformers.BlenderbotSmallTokenizer
+    :members:
+
+
+BlenderbotForConditionalGeneration
+~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+See :obj:`transformers.BartForConditionalGeneration` for arguments to `forward` and `generate`
+
+.. autoclass:: transformers.BlenderbotForConditionalGeneration
+    :members:

docs/source/model_doc/deberta.rst

@@ -0,0 +1,62 @@
+DeBERTa
+----------------------------------------------------
+
+Overview
+~~~~~~~~~~~~~~~~~~~~~
+
+The DeBERTa model was proposed in `DeBERTa: Decoding-enhanced BERT with Disentangled Attention <https://arxiv.org/abs/2006.03654>`__
+by Pengcheng He, Xiaodong Liu, Jianfeng Gao, Weizhu Chen
+It is based on Google's BERT model released in 2018 and Facebook's RoBERTa model released in 2019.
+
+It builds on RoBERTa with disentangled attention and enhanced mask decoder training with half of the data used in RoBERTa.
+
+The abstract from the paper is the following:
+
+*Recent progress in pre-trained neural language models has significantly improved the performance of many natural language processing (NLP) tasks. 
+In this paper we propose a new model architecture DeBERTa (Decoding-enhanced BERT with disentangled attention) that improves the BERT and RoBERTa 
+models using two novel techniques. The first is the disentangled attention mechanism, where each word is represented using two vectors that encode
+its content and position, respectively, and the attention weights among words are computed using disentangled matrices on their contents and 
+relative positions. Second, an enhanced mask decoder is used to replace the output softmax layer to predict the masked tokens for model pretraining.
+We show that these two techniques significantly improve the efficiency of model pre-training and performance of downstream tasks. Compared to 
+RoBERTa-Large, a DeBERTa model trained on half of the training data performs consistently better on a wide range of NLP tasks, achieving improvements 
+on MNLI by +0.9% (90.2% vs. 91.1%), on SQuAD v2.0 by +2.3% (88.4% vs. 90.7%) and RACE by +3.6% (83.2% vs. 86.8%). The DeBERTa code and pre-trained 
+models will be made publicly available at https://github.com/microsoft/DeBERTa.*
+
+
+The original code can be found `here <https://github.com/microsoft/DeBERTa>`__.
+
+
+DebertaConfig
+~~~~~~~~~~~~~~~~~~~~~
+
+.. autoclass:: transformers.DebertaConfig
+    :members:
+
+
+DebertaTokenizer
+~~~~~~~~~~~~~~~~~~~~~
+
+.. autoclass:: transformers.DebertaTokenizer
+    :members: build_inputs_with_special_tokens, get_special_tokens_mask,
+        create_token_type_ids_from_sequences, save_vocabulary
+
+
+DebertaModel
+~~~~~~~~~~~~~~~~~~~~
+
+.. autoclass:: transformers.DebertaModel
+    :members:
+
+
+DebertaPreTrainedModel
+~~~~~~~~~~~~~~~~~~~~~~~~~~
+
+.. autoclass:: transformers.DebertaPreTrainedModel
+    :members:
+
+
+DebertaForSequenceClassification
+~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+
+.. autoclass:: transformers.DebertaForSequenceClassification
+    :members:

docs/source/model_doc/gpt2.rst

@@ -88,6 +88,13 @@ GPT2DoubleHeadsModel
     :members: forward
 
 
+GPT2ForSequenceClassification
+~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+
+.. autoclass:: transformers.GPT2ForSequenceClassification
+    :members: forward
+
+
 TFGPT2Model
 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 

docs/source/model_doc/layoutlm.rst

@@ -4,8 +4,8 @@ LayoutLM
 Overview
 ~~~~~~~~~~~~~~~~~~~~~
 
-The LayoutLM model was proposed in `LayoutLM: Pre-training of Text and Layout for Document Image Understanding <https://arxiv.org/abs/1912.13318>`__
-by Yiheng Xu, Minghao Li, Lei Cui, Shaohan Huang, Furu Wei, and Ming Zhou. It's a simple but effective pre-training method 
+The LayoutLM model was proposed in the paper `LayoutLM: Pre-training of Text and Layout for Document Image Understanding <https://arxiv.org/abs/1912.13318>`__
+by Yiheng Xu, Minghao Li, Lei Cui, Shaohan Huang, Furu Wei, and Ming Zhou. It's a simple but effective pre-training method
 of text and layout for document image understanding and information extraction tasks, such as form understanding and receipt understanding.
 
 The abstract from the paper is the following:

docs/source/model_doc/marian.rst

@@ -1,36 +1,51 @@
 MarianMT
 -----------------------------------------------------------------------------------------------------------------------
-**Bugs:** If you see something strange,
-file a `Github Issue <https://github.com/huggingface/transformers/issues/new?assignees=sshleifer&labels=&template=bug-report.md&title>`__ and assign
-@sshleifer. Translations should be similar, but not identical to, output in the test set linked to in each model card.
+
+**Bugs:** If you see something strange, file a `Github Issue
+<https://github.com/huggingface/transformers/issues/new?assignees=sshleifer&labels=&template=bug-report.md&title>`__
+and assign @sshleifer. 
+
+Translations should be similar, but not identical to, output in the test set linked to in each model card.
 
 Implementation Notes
 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-- Each model is about 298 MB on disk, there are 1,000+ models.
+
+- Each model is about 298 MB on disk, there are more than 1,000 models.
 - The list of supported language pairs can be found `here <https://huggingface.co/Helsinki-NLP>`__.
-- models were originally trained by `Jörg Tiedemann <https://researchportal.helsinki.fi/en/persons/j%C3%B6rg-tiedemann>`__ using the `Marian <https://marian-nmt.github.io/>`_ C++ library, which supports fast training and translation.
-- All models are transformer encoder-decoders with 6 layers in each component. Each model's performance is documented in a model card.
+- Models were originally trained by 
+  `Jörg Tiedemann <https://researchportal.helsinki.fi/en/persons/j%C3%B6rg-tiedemann>`__ using the
+  `Marian <https://marian-nmt.github.io/>`__ C++ library, which supports fast training and translation.
+- All models are transformer encoder-decoders with 6 layers in each component. Each model's performance is documented
+  in a model card.
 - The 80 opus models that require BPE preprocessing are not supported.
-- The modeling code is the same as ``BartForConditionalGeneration`` with a few minor modifications:
-    - static (sinusoid) positional embeddings (``MarianConfig.static_position_embeddings=True``)
-    - a new final_logits_bias (``MarianConfig.add_bias_logits=True``)
-    - no layernorm_embedding (``MarianConfig.normalize_embedding=False``)
-    - the model starts generating with pad_token_id (which has 0 token_embedding) as the prefix. (Bart uses <s/>)
-- Code to bulk convert models can be found in ``convert_marian_to_pytorch.py``
+- The modeling code is the same as :class:`~transformers.BartForConditionalGeneration` with a few minor modifications:
+    - static (sinusoid) positional embeddings (:obj:`MarianConfig.static_position_embeddings=True`)
+    - a new final_logits_bias (:obj:`MarianConfig.add_bias_logits=True`)
+    - no layernorm_embedding (:obj:`MarianConfig.normalize_embedding=False`)
+    - the model starts generating with :obj:`pad_token_id` (which has 0 as a token_embedding) as the prefix (Bart uses
+      :obj:`<s/>`),
+- Code to bulk convert models can be found in ``convert_marian_to_pytorch.py``.
 
 Naming
 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-- All  model names use the following format: ``Helsinki-NLP/opus-mt-{src}-{tgt}``
-- The language codes used to name models are inconsistent. Two digit codes can usually be found `here <https://developers.google.com/admin-sdk/directory/v1/languages>`_, three digit codes require googling "language code {code}".
-- Codes formatted like ``es_AR`` are usually ``code_{region}``. That one is spanish documents from Argentina.
+
+- All  model names use the following format: :obj:`Helsinki-NLP/opus-mt-{src}-{tgt}`
+- The language codes used to name models are inconsistent. Two digit codes can usually be found `here
+  <https://developers.google.com/admin-sdk/directory/v1/languages>`__, three digit codes require googling
+  "language code {code}".
+- Codes formatted like :obj:`es_AR` are usually :obj:`code_{region}`. That one is Spanish from Argentina.
 
 
 Multilingual Models
 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 
-All  model names use the following format: ``Helsinki-NLP/opus-mt-{src}-{tgt}``:
-    - if ``src`` is in all caps, the model supports multiple input languages, you can figure out which ones by looking at the model card, or the Group Members `mapping <https://gist.github.com/sshleifer/6d20e7761931b08e73c3219027b97b8a>`_ .
-    - if ``tgt`` is in all caps, the model can output multiple languages, and you should specify a language code by prepending the desired output language to the src_text
+All  model names use the following format: :obj:`Helsinki-NLP/opus-mt-{src}-{tgt}`:
+
+    - If :obj:`src` is in all caps, the model supports multiple input languages, you can figure out which ones by
+      looking at the model card, or the Group Members `mapping
+      <https://gist.github.com/sshleifer/6d20e7761931b08e73c3219027b97b8a>`_ .
+    - If :obj:`tgt` is in all caps, the model can output multiple languages, and you should specify a language code by
+      prepending the desired output language to the :obj:`src_text`.
     - You can see a tokenizer's supported language codes in ``tokenizer.supported_language_codes``
 
 Example of translating english to many romance languages, using language codes:
@@ -54,12 +69,20 @@ Example of translating english to many romance languages, using language codes:
     # 'Isto deve ir para o português.',
     # 'Y esto al español']
 
-Sometimes, models were trained on collections of languages that do not resolve to a group. In this case, _ is used as a separator for src or tgt, as in ``'Helsinki-NLP/opus-mt-en_el_es_fi-en_el_es_fi'``. These still require language codes.
-There are many supported regional language codes, like ``>>es_ES<<`` (Spain) and ``>>es_AR<<`` (Argentina), that do not seem to change translations. I have not found these to provide different results than just using ``>>es<<``.
+Sometimes, models were trained on collections of languages that do not resolve to a group. In this case, _ is used as a
+separator for src or tgt, as in :obj:`Helsinki-NLP/opus-mt-en_el_es_fi-en_el_es_fi`. These still require language
+codes.
 
-For Example:
-    - ``Helsinki-NLP/opus-mt-NORTH_EU-NORTH_EU``: translates from all NORTH_EU languages (see `mapping <https://gist.github.com/sshleifer/6d20e7761931b08e73c3219027b97b8a>`_) to all NORTH_EU languages. Use a special language code like ``>>de<<`` to specify output language.
-    - ``Helsinki-NLP/opus-mt-ROMANCE-en``: translates from many romance languages to english, no codes needed since there is only 1 tgt language.
+There are many supported regional language codes, like :obj:`>>es_ES<<` (Spain) and :obj:`>>es_AR<<` (Argentina), that
+do not seem to change translations. I have not found these to provide different results than just using :obj:`>>es<<`.
+
+For example:
+
+    - `Helsinki-NLP/opus-mt-NORTH_EU-NORTH_EU`: translates from all NORTH_EU languages (see `mapping
+      <https://gist.github.com/sshleifer/6d20e7761931b08e73c3219027b97b8a>`_) to all NORTH_EU languages. Use a special
+      language code like :obj:`>>de<<` to specify output language.
+    - `Helsinki-NLP/opus-mt-ROMANCE-en`: translates from many romance languages to english, no codes needed since there
+      is only one target language.
 
 
 
@@ -86,13 +109,6 @@ Code to see available pretrained models:
     suffix = [x.split('/')[1] for x in model_ids]
     multi_models = [f'{org}/{s}' for s in suffix if s != s.lower()]
 
-MarianMTModel
-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-
-Pytorch version of marian-nmt's transformer.h (c++). Designed for the OPUS-NMT translation checkpoints.
-Model API is identical to BartForConditionalGeneration.
-Available models are listed at `Model List <https://huggingface.co/models?search=Helsinki-NLP>`__
-This class inherits nearly all functionality from ``BartForConditionalGeneration``, see that page for method signatures.
 
 MarianConfig
 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
@@ -107,5 +123,7 @@ MarianTokenizer
     :members: prepare_seq2seq_batch
 
 
+MarianMTModel
+~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 
-
+.. autoclass:: transformers.MarianMTModel

docs/source/model_doc/mbart.rst

@@ -1,15 +1,20 @@
 MBart
 -----------------------------------------------------------------------------------------------------------------------
-**DISCLAIMER:** If you see something strange,
-file a `Github Issue <https://github.com/huggingface/transformers/issues/new?assignees=&labels=&template=bug-report.md&title>`__ and assign
+
+**DISCLAIMER:** If you see something strange, file a `Github Issue
+<https://github.com/huggingface/transformers/issues/new?assignees=&labels=&template=bug-report.md&title>`__ and assign
 @sshleifer
 
 Overview
 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-The MBart model was presented in `Multilingual Denoising Pre-training for Neural Machine Translation <https://arxiv.org/abs/2001.08210>`_ by Yinhan Liu, Jiatao Gu, Naman Goyal, Xian Li, Sergey Edunov
-Marjan Ghazvininejad, Mike Lewis, Luke Zettlemoyer. According to the abstract,
+The MBart model was presented in `Multilingual Denoising Pre-training for Neural Machine Translation
+<https://arxiv.org/abs/2001.08210>`_ by Yinhan Liu, Jiatao Gu, Naman Goyal, Xian Li, Sergey Edunov
+Marjan Ghazvininejad, Mike Lewis, Luke Zettlemoyer.
 
-MBART is a sequence-to-sequence denoising auto-encoder pre-trained on large-scale monolingual corpora in many languages using the BART objective. mBART is one of the first methods for pre-training a complete sequence-to-sequence model by denoising full texts in multiple languages, while previous approaches have focused only on the encoder, decoder, or reconstructing parts of the text.
+According to the abstract, MBART is a sequence-to-sequence denoising auto-encoder pretrained on large-scale monolingual
+corpora in many languages using the BART objective. mBART is one of the first methods for pre-training a complete
+sequence-to-sequence model by denoising full texts in multiple languages, while previous approaches have focused only
+on the encoder, decoder, or reconstructing parts of the text.
 
 The Authors' code can be found `here <https://github.com/pytorch/fairseq/tree/master/examples/mbart>`__
 
@@ -18,10 +23,11 @@ Training
 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 MBart is a multilingual encoder-decoder (seq-to-seq) model primarily intended for translation task. 
 As the model is multilingual it expects the sequences in a different format. A special language id token 
-is added in both the source and target text. The source text format is ``X [eos, src_lang_code]`` 
-where ``X`` is the source text. The target text format is ```[tgt_lang_code] X [eos]```. ```bos``` is never used.
-The ```MBartTokenizer.prepare_seq2seq_batch``` handles this automatically and should be used to encode 
-the sequences for seq-2-seq fine-tuning.
+is added in both the source and target text. The source text format is :obj:`X [eos, src_lang_code]`
+where :obj:`X` is the source text. The target text format is :obj:`[tgt_lang_code] X [eos]`. :obj:`bos` is never used.
+
+The :meth:`~transformers.MBartTokenizer.prepare_seq2seq_batch` handles this automatically and should be used to encode 
+the sequences for sequence-to-sequence fine-tuning.
 
 - Supervised training
 
@@ -38,8 +44,8 @@ the sequences for seq-2-seq fine-tuning.
 
 - Generation
 
-    While generating the target text set the `decoder_start_token_id` to the target language id. 
-    The following example shows how to translate English to Romanian using the ```facebook/mbart-large-en-ro``` model.
+    While generating the target text set the :obj:`decoder_start_token_id` to the target language id. 
+    The following example shows how to translate English to Romanian using the `facebook/mbart-large-en-ro` model.
 
 .. code-block::
 
@@ -71,6 +77,4 @@ MBartForConditionalGeneration
 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 
 .. autoclass:: transformers.MBartForConditionalGeneration
-    :members: generate, forward
-
-
+    :members: forward

docs/source/model_doc/pegasus.rst

@@ -1,30 +1,40 @@
 Pegasus
 -----------------------------------------------------------------------------------------------------------------------
-**DISCLAIMER:** If you see something strange,
-file a `Github Issue <https://github.com/huggingface/transformers/issues/new?assignees=sshleifer&labels=&template=bug-report.md&title>`__ and assign
-@sshleifer.
+
+**DISCLAIMER:** If you see something strange, file a `Github Issue
+<https://github.com/huggingface/transformers/issues/new?assignees=sshleifer&labels=&template=bug-report.md&title>`__
+and assign @sshleifer.
 
 
 Overview
 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 
 The Pegasus model was proposed in `PEGASUS: Pre-training with Extracted Gap-sentences for
-Abstractive Summarization <https://arxiv.org/pdf/1912.08777.pdf>`_ by Jingqing Zhang, Yao Zhao, Mohammad Saleh and Peter J. Liu on Dec 18, 2019.
+Abstractive Summarization <https://arxiv.org/pdf/1912.08777.pdf>`__ by Jingqing Zhang, Yao Zhao, Mohammad Saleh and
+Peter J. Liu on Dec 18, 2019.
+
 According to the abstract,
 
-- Pegasus' pretraining task is intentionally similar to summarization: important sentences are removed/masked from an input document and are generated together as one output sequence from the remaining sentences, similar to an extractive summary.
+- Pegasus' pretraining task is intentionally similar to summarization: important sentences are removed/masked from an
+  input document and are generated together as one output sequence from the remaining sentences, similar to an
+  extractive summary.
 - Pegasus achieves SOTA summarization performance on all 12 downstream tasks, as measured by ROUGE and human eval.
 
-The Authors' code can be found `here <https://github.com/google-research/pegasus>`_.
+The Authors' code can be found `here <https://github.com/google-research/pegasus>`__.
 
 
 Checkpoints
 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-All the `checkpoints <https://huggingface.co/models?search=pegasus>`_ are finetuned for summarization, besides ``pegasus-large``, whence the other checkpoints are finetuned.
+
+All the `checkpoints <https://huggingface.co/models?search=pegasus>`__ are fine-tuned for summarization, besides 
+`pegasus-large`, whence the other checkpoints are fine-tuned:
+
 - Each checkpoint is 2.2 GB on disk and 568M parameters.
 - FP16 is not supported (help/ideas on this appreciated!).
 - Summarizing xsum in fp32 takes about 400ms/sample, with default parameters on a v100 GPU.
-- For XSUM, The paper reports rouge1,rouge2, rougeL of paper: 47.21/24.56/39.25. As of Aug 9, this port scores 46.91/24.34/39.1.
+- For XSUM, The paper reports rouge1,rouge2, rougeL of paper: 47.21/24.56/39.25. As of Aug 9, this port scores
+  46.91/24.34/39.1.
+
 The gap is likely because of different alpha/length_penalty implementations in beam search.
 
 
@@ -32,14 +42,16 @@ Implementation Notes
 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 
 - All models are transformer encoder-decoders with 16 layers in each component.
-- The implementation is completely inherited from ``BartForConditionalGeneration``
+- The implementation is completely inherited from :class:`~transformers.BartForConditionalGeneration`
 - Some key configuration differences:
     - static, sinusoidal position embeddings
-    - no ``layernorm_embedding`` (``PegasusConfig.normalize_embedding=False``)
+    - no :obj:`layernorm_embedding` (:obj`PegasusConfig.normalize_embedding=False`)
     - the model starts generating with pad_token_id (which has 0 token_embedding) as the prefix.
-    - ``num_beams=8``
-- All pretrained pegasus checkpoints are the same besides three attributes: ``tokenizer.model_max_length`` (max input size),  ``max_length`` (max num tokens to generate) and ``length_penalty``
-- Code to convert checkpoints trained in the author's `repo <https://github.com/google-research/pegasus>`_ can be found in ``convert_pegasus_tf_to_pytorch.py``
+    - more beams are used (:obj:`num_beams=8`)
+- All pretrained pegasus checkpoints are the same besides three attributes: :obj:`tokenizer.model_max_length` (maximum
+  input size), :obj:`max_length` (the maximum number of tokens to generate) and :obj:`length_penalty`.
+- The code to convert checkpoints trained in the author's `repo <https://github.com/google-research/pegasus>`_ can be
+  found in ``convert_pegasus_tf_to_pytorch.py``.
 
 
 Usage Example
@@ -62,48 +74,12 @@ Usage Example
     tgt_text = tokenizer.batch_decode(translated, skip_special_tokens=True)
     assert tgt_text[0] == "California's largest electricity provider has turned off power to hundreds of thousands of customers."
 
-PegasusForConditionalGeneration
-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-
-This class inherits all functionality from ``BartForConditionalGeneration``, see that page for method signatures.
-Available models are listed at `Model List <https://huggingface.co/models?search=pegasus>`__
-
-.. autoclass:: transformers.PegasusForConditionalGeneration
-    :members:
 
 
 PegasusConfig
 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-This config fully inherits from ``BartConfig``, but pegasus uses different default values:
-Up to date parameter values can be seen in `S3 <https://s3.amazonaws.com/models.huggingface.co/bert/google/pegasus-xsum/config.json>`_.
-As of Aug 10, 2020, they are:
 
-.. code-block:: python
-
-    dict(
-    vocab_size=96103,
-    max_position_embeddings=512,
-    d_model=1024,
-    encoder_ffn_dim=4096,
-    decoder_ffn_dim=4096,
-    encoder_attention_heads=16,
-    decoder_attention_heads=16,
-    encoder_layers=16,
-    decoder_layers=16,
-    dropout=0.1,
-    attention_dropout=0.1,
-    activation_dropout=0.1,
-    pad_token_id=0,
-    eos_token_id=1,
-    is_encoder_decoder=True,
-    normalize_before=True,
-    scale_embedding=True,
-    normalize_embedding=False,
-    add_final_layer_norm=True,
-    static_position_embeddings=True,
-    num_beams=8,
-    activation_function="relu",
-    )
+.. autoclass:: transformers.PegasusConfig
 
 
 PegasusTokenizer
@@ -114,4 +90,7 @@ warning: ``add_tokens`` does not work at the moment.
     :members: __call__, prepare_seq2seq_batch
 
 
+PegasusForConditionalGeneration
+~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 
+.. autoclass:: transformers.PegasusForConditionalGeneration

docs/source/model_doc/squeezebert.rst

@@ -0,0 +1,103 @@
+SqueezeBERT
+-----------------------------------------------------------------------------------------------------------------------
+
+Overview
+~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+
+The SqueezeBERT model was proposed in
+`SqueezeBERT: What can computer vision teach NLP about efficient neural networks?
+<https://arxiv.org/abs/2006.11316>`__
+by Forrest N. Iandola, Albert E. Shaw, Ravi Krishna, Kurt W. Keutzer.
+It's a bidirectional transformer similar to the BERT model.
+The key difference between the BERT architecture and the SqueezeBERT architecture
+is that SqueezeBERT uses `grouped convolutions <https://blog.yani.io/filter-group-tutorial>`__
+instead of fully-connected layers for the Q, K, V and FFN layers.
+
+The abstract from the paper is the following:
+
+*Humans read and write hundreds of billions of messages every day. Further, due to the availability of
+large datasets, large computing systems, and better neural network models, natural language processing (NLP)
+technology has made significant strides in understanding, proofreading, and organizing these messages.
+Thus, there is a significant opportunity to deploy NLP in myriad applications to help web users,
+social networks, and businesses. In particular, we consider smartphones and other mobile devices as
+crucial platforms for deploying NLP models at scale. However, today's highly-accurate NLP neural network
+models such as BERT and RoBERTa are extremely computationally expensive, with BERT-base taking 1.7 seconds
+to classify a text snippet on a Pixel 3 smartphone. In this work, we observe that methods such as grouped
+convolutions have yielded significant speedups for computer vision networks, but many of these techniques
+have not been adopted by NLP neural network designers. We demonstrate how to replace several operations in
+self-attention layers with grouped convolutions, and we use this technique in a novel network architecture
+called SqueezeBERT, which runs 4.3x faster than BERT-base on the Pixel 3 while achieving competitive
+accuracy on the GLUE test set. The SqueezeBERT code will be released.*
+
+Tips:
+
+- SqueezeBERT is a model with absolute position embeddings so it's usually advised to pad the inputs on
+  the right rather than the left.
+- SqueezeBERT is similar to BERT and therefore relies on the masked language modeling (MLM) objective.
+  It is therefore efficient at predicting masked tokens and at NLU in general, but is not optimal for
+  text generation. Models trained with a causal language modeling (CLM) objective are better in that regard.
+- For best results when finetuning on sequence classification tasks, it is recommended to start with the
+  `squeezebert/squeezebert-mnli-headless` checkpoint.
+
+SqueezeBertConfig
+~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+
+.. autoclass:: transformers.SqueezeBertConfig
+    :members:
+
+
+SqueezeBertTokenizer
+~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+
+.. autoclass:: transformers.SqueezeBertTokenizer
+    :members: build_inputs_with_special_tokens, get_special_tokens_mask,
+        create_token_type_ids_from_sequences, save_vocabulary
+
+
+SqueezeBertTokenizerFast
+~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+
+.. autoclass:: transformers.SqueezeBertTokenizerFast
+    :members:
+
+
+SqueezeBertModel
+~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+
+.. autoclass:: transformers.SqueezeBertModel
+    :members:
+
+
+SqueezeBertForMaskedLM
+~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+
+.. autoclass:: transformers.SqueezeBertForMaskedLM
+    :members:
+
+
+SqueezeBertForSequenceClassification
+~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+
+.. autoclass:: transformers.SqueezeBertForSequenceClassification
+    :members:
+
+
+SqueezeBertForMultipleChoice
+~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+
+.. autoclass:: transformers.SqueezeBertForMultipleChoice
+    :members:
+
+
+SqueezeBertForTokenClassification
+~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+
+.. autoclass:: transformers.SqueezeBertForTokenClassification
+    :members:
+
+
+SqueezeBertForQuestionAnswering
+~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+
+.. autoclass:: transformers.SqueezeBertForQuestionAnswering
+    :members:

docs/source/model_doc/transformerxl.rst

@@ -46,13 +46,6 @@ TransfoXLTokenizer
     :members: save_vocabulary
 
 
-TransfoXLTokenizerFast
-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-
-.. autoclass:: transformers.TransfoXLTokenizerFast
-    :members:
-
-
 TransfoXL specific outputs
 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 

docs/source/model_sharing.rst

@@ -112,8 +112,7 @@ Make sure there are no garbage files in the directory you'll upload. It should o
 - a `tf_model.h5` file, which is the TensorFlow checkpoint (unless you can't have it for some reason) ;
 - a `special_tokens_map.json`, which is part of your :doc:`tokenizer <main_classes/tokenizer>` save;
 - a `tokenizer_config.json`, which is part of your :doc:`tokenizer <main_classes/tokenizer>` save;
-- a `vocab.txt`, which is the vocabulary of your tokenizer, part of your :doc:`tokenizer <main_classes/tokenizer>`
-  save;
+- files named `vocab.json`, `vocab.txt`, `merges.txt`, or similar, which contain the vocabulary of your tokenizer, part of your :doc:`tokenizer <main_classes/tokenizer>` save;
 - maybe a `added_tokens.json`, which is part of your :doc:`tokenizer <main_classes/tokenizer>` save.
 
 Other files can safely be deleted.
@@ -221,4 +220,3 @@ You can also delete unneeded files with
 .. code-block::
 
     transformers-cli s3 rm awesome-name-you-picked/filename
-

docs/source/pretrained_models.rst

@@ -11,26 +11,26 @@ For a list that includes community-uploaded models, refer to `https://huggingfac
 | BERT               | ``bert-base-uncased``                                      | | 12-layer, 768-hidden, 12-heads, 110M parameters.                                                                                    |
 |                    |                                                            | | Trained on lower-cased English text.                                                                                                |
 |                    +------------------------------------------------------------+---------------------------------------------------------------------------------------------------------------------------------------+
-|                    | ``bert-large-uncased``                                     | | 24-layer, 1024-hidden, 16-heads, 340M parameters.                                                                                   |
+|                    | ``bert-large-uncased``                                     | | 24-layer, 1024-hidden, 16-heads, 336M parameters.                                                                                   |
 |                    |                                                            | | Trained on lower-cased English text.                                                                                                |
 |                    +------------------------------------------------------------+---------------------------------------------------------------------------------------------------------------------------------------+
-|                    | ``bert-base-cased``                                        | | 12-layer, 768-hidden, 12-heads, 110M parameters.                                                                                    |
+|                    | ``bert-base-cased``                                        | | 12-layer, 768-hidden, 12-heads, 109M parameters.                                                                                    |
 |                    |                                                            | | Trained on cased English text.                                                                                                      |
 |                    +------------------------------------------------------------+---------------------------------------------------------------------------------------------------------------------------------------+
-|                    | ``bert-large-cased``                                       | | 24-layer, 1024-hidden, 16-heads, 340M parameters.                                                                                   |
+|                    | ``bert-large-cased``                                       | | 24-layer, 1024-hidden, 16-heads, 335M parameters.                                                                                   |
 |                    |                                                            | | Trained on cased English text.                                                                                                      |
 |                    +------------------------------------------------------------+---------------------------------------------------------------------------------------------------------------------------------------+
-|                    | ``bert-base-multilingual-uncased``                         | | (Original, not recommended) 12-layer, 768-hidden, 12-heads, 110M parameters.                                                        |
+|                    | ``bert-base-multilingual-uncased``                         | | (Original, not recommended) 12-layer, 768-hidden, 12-heads, 168M parameters.                                                        |
 |                    |                                                            | | Trained on lower-cased text in the top 102 languages with the largest Wikipedias                                                    |
 |                    |                                                            |                                                                                                                                       |
 |                    |                                                            | (see `details <https://github.com/google-research/bert/blob/master/multilingual.md>`__).                                              |
 |                    +------------------------------------------------------------+---------------------------------------------------------------------------------------------------------------------------------------+
-|                    | ``bert-base-multilingual-cased``                           | | (New, **recommended**) 12-layer, 768-hidden, 12-heads, 110M parameters.                                                             |
+|                    | ``bert-base-multilingual-cased``                           | | (New, **recommended**) 12-layer, 768-hidden, 12-heads, 179M parameters.                                                             |
 |                    |                                                            | | Trained on cased text in the top 104 languages with the largest Wikipedias                                                          |
 |                    |                                                            |                                                                                                                                       |
 |                    |                                                            | (see `details <https://github.com/google-research/bert/blob/master/multilingual.md>`__).                                              |
 |                    +------------------------------------------------------------+---------------------------------------------------------------------------------------------------------------------------------------+
-|                    | ``bert-base-chinese``                                      | | 12-layer, 768-hidden, 12-heads, 110M parameters.                                                                                    |
+|                    | ``bert-base-chinese``                                      | | 12-layer, 768-hidden, 12-heads, 103M parameters.                                                                                    |
 |                    |                                                            | | Trained on cased Chinese Simplified and Traditional text.                                                                           |
 |                    +------------------------------------------------------------+---------------------------------------------------------------------------------------------------------------------------------------+
 |                    | ``bert-base-german-cased``                                 | | 12-layer, 768-hidden, 12-heads, 110M parameters.                                                                                    |
@@ -38,22 +38,22 @@ For a list that includes community-uploaded models, refer to `https://huggingfac
 |                    |                                                            |                                                                                                                                       |
 |                    |                                                            | (see `details on deepset.ai website <https://deepset.ai/german-bert>`__).                                                             |
 |                    +------------------------------------------------------------+---------------------------------------------------------------------------------------------------------------------------------------+
-|                    | ``bert-large-uncased-whole-word-masking``                  | | 24-layer, 1024-hidden, 16-heads, 340M parameters.                                                                                   |
+|                    | ``bert-large-uncased-whole-word-masking``                  | | 24-layer, 1024-hidden, 16-heads, 336M parameters.                                                                                   |
 |                    |                                                            | | Trained on lower-cased English text using Whole-Word-Masking                                                                        |
 |                    |                                                            |                                                                                                                                       |
 |                    |                                                            | (see `details <https://github.com/google-research/bert/#bert>`__).                                                                    |
 |                    +------------------------------------------------------------+---------------------------------------------------------------------------------------------------------------------------------------+
-|                    | ``bert-large-cased-whole-word-masking``                    | | 24-layer, 1024-hidden, 16-heads, 340M parameters.                                                                                   |
+|                    | ``bert-large-cased-whole-word-masking``                    | | 24-layer, 1024-hidden, 16-heads, 335M parameters.                                                                                   |
 |                    |                                                            | | Trained on cased English text using Whole-Word-Masking                                                                              |
 |                    |                                                            |                                                                                                                                       |
 |                    |                                                            | (see `details <https://github.com/google-research/bert/#bert>`__).                                                                    |
 |                    +------------------------------------------------------------+---------------------------------------------------------------------------------------------------------------------------------------+
-|                    | ``bert-large-uncased-whole-word-masking-finetuned-squad``  | | 24-layer, 1024-hidden, 16-heads, 340M parameters.                                                                                   |
+|                    | ``bert-large-uncased-whole-word-masking-finetuned-squad``  | | 24-layer, 1024-hidden, 16-heads, 336M parameters.                                                                                   |
 |                    |                                                            | | The ``bert-large-uncased-whole-word-masking`` model fine-tuned on SQuAD                                                             |
 |                    |                                                            |                                                                                                                                       |
 |                    |                                                            | (see details of fine-tuning in the `example section <https://github.com/huggingface/transformers/tree/master/examples>`__).           |
 |                    +------------------------------------------------------------+---------------------------------------------------------------------------------------------------------------------------------------+
-|                    | ``bert-large-cased-whole-word-masking-finetuned-squad``    | | 24-layer, 1024-hidden, 16-heads, 340M parameters                                                                                    |
+|                    | ``bert-large-cased-whole-word-masking-finetuned-squad``    | | 24-layer, 1024-hidden, 16-heads, 335M parameters                                                                                    |
 |                    |                                                            | | The ``bert-large-cased-whole-word-masking`` model fine-tuned on SQuAD                                                               |
 |                    |                                                            |                                                                                                                                       |
 |                    |                                                            | (see `details of fine-tuning in the example section <https://huggingface.co/transformers/examples.html>`__)                           |
@@ -73,31 +73,31 @@ For a list that includes community-uploaded models, refer to `https://huggingfac
 |                    |                                                            |                                                                                                                                       |
 |                    |                                                            | (see `details on dbmdz repository <https://github.com/dbmdz/german-bert>`__).                                                         |
 |                    +------------------------------------------------------------+---------------------------------------------------------------------------------------------------------------------------------------+
-|                    | ``cl-tohoku/bert-base-japanese``                           | | 12-layer, 768-hidden, 12-heads, 110M parameters.                                                                                    |
+|                    | ``cl-tohoku/bert-base-japanese``                           | | 12-layer, 768-hidden, 12-heads, 111M parameters.                                                                                    |
 |                    |                                                            | | Trained on Japanese text. Text is tokenized with MeCab and WordPiece and this requires some extra dependencies,                     |
 |                    |                                                            | | `fugashi <https://github.com/polm/fugashi>`__ which is a wrapper around `MeCab <https://taku910.github.io/mecab/>`__.               |
 |                    |                                                            | | Use ``pip install transformers["ja"]`` (or ``pip install -e .["ja"]`` if you install from source) to install them.                  |
 |                    |                                                            |                                                                                                                                       |
 |                    |                                                            | (see `details on cl-tohoku repository <https://github.com/cl-tohoku/bert-japanese>`__).                                               |
 |                    +------------------------------------------------------------+---------------------------------------------------------------------------------------------------------------------------------------+
-|                    | ``cl-tohoku/bert-base-japanese-whole-word-masking``        | | 12-layer, 768-hidden, 12-heads, 110M parameters.                                                                                    |
+|                    | ``cl-tohoku/bert-base-japanese-whole-word-masking``        | | 12-layer, 768-hidden, 12-heads, 111M parameters.                                                                                    |
 |                    |                                                            | | Trained on Japanese text. Text is tokenized with MeCab and WordPiece and this requires some extra dependencies,                     |
 |                    |                                                            | | `fugashi <https://github.com/polm/fugashi>`__ which is a wrapper around `MeCab <https://taku910.github.io/mecab/>`__.               |
 |                    |                                                            | | Use ``pip install transformers["ja"]`` (or ``pip install -e .["ja"]`` if you install from source) to install them.                  |
 |                    |                                                            |                                                                                                                                       |
 |                    |                                                            | (see `details on cl-tohoku repository <https://github.com/cl-tohoku/bert-japanese>`__).                                               |
 |                    +------------------------------------------------------------+---------------------------------------------------------------------------------------------------------------------------------------+
-|                    | ``cl-tohoku/bert-base-japanese-char``                      | | 12-layer, 768-hidden, 12-heads, 110M parameters.                                                                                    |
+|                    | ``cl-tohoku/bert-base-japanese-char``                      | | 12-layer, 768-hidden, 12-heads, 90M parameters.                                                                                     |
 |                    |                                                            | | Trained on Japanese text. Text is tokenized into characters.                                                                        |
 |                    |                                                            |                                                                                                                                       |
 |                    |                                                            | (see `details on cl-tohoku repository <https://github.com/cl-tohoku/bert-japanese>`__).                                               |
 |                    +------------------------------------------------------------+---------------------------------------------------------------------------------------------------------------------------------------+
-|                    | ``cl-tohoku/bert-base-japanese-char-whole-word-masking``   | | 12-layer, 768-hidden, 12-heads, 110M parameters.                                                                                    |
+|                    | ``cl-tohoku/bert-base-japanese-char-whole-word-masking``   | | 12-layer, 768-hidden, 12-heads, 90M parameters.                                                                                     |
 |                    |                                                            | | Trained on Japanese text using Whole-Word-Masking. Text is tokenized into characters.                                               |
 |                    |                                                            |                                                                                                                                       |
 |                    |                                                            | (see `details on cl-tohoku repository <https://github.com/cl-tohoku/bert-japanese>`__).                                               |
 |                    +------------------------------------------------------------+---------------------------------------------------------------------------------------------------------------------------------------+
-|                    | ``TurkuNLP/bert-base-finnish-cased-v1``                    | | 12-layer, 768-hidden, 12-heads, 110M parameters.                                                                                    |
+|                    | ``TurkuNLP/bert-base-finnish-cased-v1``                    | | 12-layer, 768-hidden, 12-heads, 125M parameters.                                                                                    |
 |                    |                                                            | | Trained on cased Finnish text.                                                                                                      |
 |                    |                                                            |                                                                                                                                       |
 |                    |                                                            | (see `details on turkunlp.org <http://turkunlp.org/FinBERT/>`__).                                                                     |
@@ -294,10 +294,10 @@ For a list that includes community-uploaded models, refer to `https://huggingfac
 |                    | ``t5-11B``                                                 | | ~11B parameters with 24-layers, 1024-hidden-state, 65536 feed-forward hidden-state, 128-heads,                                      |
 |                    |                                                            | | Trained on English text: the Colossal Clean Crawled Corpus (C4)                                                                     |
 +--------------------+------------------------------------------------------------+---------------------------------------------------------------------------------------------------------------------------------------+
-| XLM-RoBERTa        | ``xlm-roberta-base``                                       | | ~125M parameters with 12-layers, 768-hidden-state, 3072 feed-forward hidden-state, 8-heads,                                         |
+| XLM-RoBERTa        | ``xlm-roberta-base``                                       | | ~270M parameters with 12-layers, 768-hidden-state, 3072 feed-forward hidden-state, 8-heads,                                         |
 |                    |                                                            | | Trained on on 2.5 TB of newly created clean CommonCrawl data in 100 languages                                                       |
 |                    +------------------------------------------------------------+---------------------------------------------------------------------------------------------------------------------------------------+
-|                    | ``xlm-roberta-large``                                      | | ~355M parameters with 24-layers, 1027-hidden-state, 4096 feed-forward hidden-state, 16-heads,                                       |
+|                    | ``xlm-roberta-large``                                      | | ~550M parameters with 24-layers, 1024-hidden-state, 4096 feed-forward hidden-state, 16-heads,                                       |
 |                    |                                                            | | Trained on 2.5 TB of newly created clean CommonCrawl data in 100 languages                                                          |
 +--------------------+------------------------------------------------------------+---------------------------------------------------------------------------------------------------------------------------------------+
 | FlauBERT           | ``flaubert/flaubert_small_cased``                          | | 6-layer, 512-hidden, 8-heads, 54M parameters                                                                                        |
@@ -415,4 +415,24 @@ For a list that includes community-uploaded models, refer to `https://huggingfac
 |                    | ``microsoft/layoutlm-large-uncased``                       | | 24 layers, 1024-hidden, 16-heads, 343M parameters                                                                                   |
 |                    |                                                            |                                                                                                                                       |
 |                    |                                                            | (see `details <https://github.com/microsoft/unilm/tree/master/layoutlm>`__)                                                           |
-+--------------------+------------------------------------------------------------+---------------------------------------------------------------------------------------------------------------------------------------+
++--------------------+------------------------------------------------------------+---------------------------------------------------------------------------------------------------------------------------------------+
+| DeBERTa            | ``microsoft/deberta-base``                                 | | 12-layer, 768-hidden, 12-heads, ~125M parameters                                                                                    |
+|                    |                                                            | | DeBERTa using the BERT-base architecture                                                                                            |
+|                    |                                                            |                                                                                                                                       |
+|                    |                                                            | (see `details <https://github.com/microsoft/DeBERTa>`__)                                                                              |
+|                    +------------------------------------------------------------+---------------------------------------------------------------------------------------------------------------------------------------+
+|                    | ``microsoft/deberta-large``                                | | 24-layer, 1024-hidden, 16-heads, ~390M parameters                                                                                   |
+|                    |                                                            | | DeBERTa using the BERT-large architecture                                                                                           |
+|                    |                                                            |                                                                                                                                       |
+|                    |                                                            | (see `details <https://github.com/microsoft/DeBERTa>`__)                                                                              |
++--------------------+------------------------------------------------------------+---------------------------------------------------------------------------------------------------------------------------------------+
+| SqueezeBERT        | ``squeezebert/squeezebert-uncased``                        | | 12-layer, 768-hidden, 12-heads, 51M parameters, 4.3x faster than bert-base-uncased on a smartphone.                                 |
+|                    |                                                            | | SqueezeBERT architecture pretrained from scratch on masked language model (MLM) and sentence order prediction (SOP) tasks.          |
+|                    +------------------------------------------------------------+---------------------------------------------------------------------------------------------------------------------------------------+
+|                    | ``squeezebert/squeezebert-mnli``                           | | 12-layer, 768-hidden, 12-heads, 51M parameters, 4.3x faster than bert-base-uncased on a smartphone.                                 |
+|                    |                                                            | | This is the squeezebert-uncased model finetuned on MNLI sentence pair classification task with distillation from electra-base.      |
+|                    +------------------------------------------------------------+---------------------------------------------------------------------------------------------------------------------------------------+
+|                    | ``squeezebert/squeezebert-mnli-headless``                  | | 12-layer, 768-hidden, 12-heads, 51M parameters, 4.3x faster than bert-base-uncased on a smartphone.                                 |
+|                    |                                                            | | This is the squeezebert-uncased model finetuned on MNLI sentence pair classification task with distillation from electra-base.      |
+|                    |                                                            | | The final classification layer is removed, so when you finetune, the final layer will be reinitialized.                             |
++--------------------+------------------------------------------------------------+---------------------------------------------------------------------------------------------------------------------------------------+

docs/source/task_summary.rst

@@ -89,7 +89,7 @@ of each other. The process is the following:
     >>> import torch
 
     >>> tokenizer = AutoTokenizer.from_pretrained("bert-base-cased-finetuned-mrpc")
-    >>> model = AutoModelForSequenceClassification.from_pretrained("bert-base-cased-finetuned-mrpc")
+    >>> model = AutoModelForSequenceClassification.from_pretrained("bert-base-cased-finetuned-mrpc", return_dict=True)
 
     >>> classes = ["not paraphrase", "is paraphrase"]
 
@@ -122,7 +122,7 @@ of each other. The process is the following:
     >>> import tensorflow as tf
 
     >>> tokenizer = AutoTokenizer.from_pretrained("bert-base-cased-finetuned-mrpc")
-    >>> model = TFAutoModelForSequenceClassification.from_pretrained("bert-base-cased-finetuned-mrpc")
+    >>> model = TFAutoModelForSequenceClassification.from_pretrained("bert-base-cased-finetuned-mrpc", return_dict=True)
 
     >>> classes = ["not paraphrase", "is paraphrase"]
 
@@ -213,7 +213,7 @@ Here is an example of question answering using a model and a tokenizer. The proc
     >>> import torch
 
     >>> tokenizer = AutoTokenizer.from_pretrained("bert-large-uncased-whole-word-masking-finetuned-squad")
-    >>> model = AutoModelForQuestionAnswering.from_pretrained("bert-large-uncased-whole-word-masking-finetuned-squad")
+    >>> model = AutoModelForQuestionAnswering.from_pretrained("bert-large-uncased-whole-word-masking-finetuned-squad", return_dict=True)
 
     >>> text = r"""
     ... 🤗 Transformers (formerly known as pytorch-transformers and pytorch-pretrained-bert) provides general-purpose
@@ -255,7 +255,7 @@ Here is an example of question answering using a model and a tokenizer. The proc
     >>> import tensorflow as tf
 
     >>> tokenizer = AutoTokenizer.from_pretrained("bert-large-uncased-whole-word-masking-finetuned-squad")
-    >>> model = TFAutoModelForQuestionAnswering.from_pretrained("bert-large-uncased-whole-word-masking-finetuned-squad")
+    >>> model = TFAutoModelForQuestionAnswering.from_pretrained("bert-large-uncased-whole-word-masking-finetuned-squad", return_dict=True)
 
     >>> text = r"""
     ... 🤗 Transformers (formerly known as pytorch-transformers and pytorch-pretrained-bert) provides general-purpose
@@ -378,7 +378,7 @@ Here is an example of doing masked language modeling using a model and a tokeniz
     >>> import torch
 
     >>> tokenizer = AutoTokenizer.from_pretrained("distilbert-base-cased")
-    >>> model = AutoModelWithLMHead.from_pretrained("distilbert-base-cased")
+    >>> model = AutoModelWithLMHead.from_pretrained("distilbert-base-cased", return_dict=True)
 
     >>> sequence = f"Distilled models are smaller than the models they mimic. Using them instead of the large versions would help {tokenizer.mask_token} our carbon footprint."
 
@@ -394,7 +394,7 @@ Here is an example of doing masked language modeling using a model and a tokeniz
     >>> import tensorflow as tf
 
     >>> tokenizer = AutoTokenizer.from_pretrained("distilbert-base-cased")
-    >>> model = TFAutoModelWithLMHead.from_pretrained("distilbert-base-cased")
+    >>> model = TFAutoModelWithLMHead.from_pretrained("distilbert-base-cased", return_dict=True)
 
     >>> sequence = f"Distilled models are smaller than the models they mimic. Using them instead of the large versions would help {tokenizer.mask_token} our carbon footprint."
 
@@ -439,7 +439,7 @@ Here is an example of using the tokenizer and model and leveraging the :func:`~t
     >>> from torch.nn import functional as F
 
     >>> tokenizer = AutoTokenizer.from_pretrained("gpt2")
-    >>> model = AutoModelWithLMHead.from_pretrained("gpt2")
+    >>> model = AutoModelWithLMHead.from_pretrained("gpt2", return_dict=True)
 
     >>> sequence = f"Hugging Face is based in DUMBO, New York City, and "
 
@@ -463,7 +463,7 @@ Here is an example of using the tokenizer and model and leveraging the :func:`~t
     >>> import tensorflow as tf
 
     >>> tokenizer = AutoTokenizer.from_pretrained("gpt2")
-    >>> model = TFAutoModelWithLMHead.from_pretrained("gpt2")
+    >>> model = TFAutoModelWithLMHead.from_pretrained("gpt2", return_dict=True)
 
     >>> sequence = f"Hugging Face is based in DUMBO, New York City, and "
 
@@ -517,7 +517,7 @@ Here is an example of text generation using ``XLNet`` and its tokenzier.
     >>> ## PYTORCH CODE
     >>> from transformers import AutoModelWithLMHead, AutoTokenizer
 
-    >>> model = AutoModelWithLMHead.from_pretrained("xlnet-base-cased")
+    >>> model = AutoModelWithLMHead.from_pretrained("xlnet-base-cased", return_dict=True)
     >>> tokenizer = AutoTokenizer.from_pretrained("xlnet-base-cased")
 
     >>> # Padding text helps XLNet with short prompts - proposed by Aman Rusia in https://github.com/rusiaaman/XLNet-gen#methodology
@@ -542,7 +542,7 @@ Here is an example of text generation using ``XLNet`` and its tokenzier.
     >>> ## TENSORFLOW CODE
     >>> from transformers import TFAutoModelWithLMHead, AutoTokenizer
 
-    >>> model = TFAutoModelWithLMHead.from_pretrained("xlnet-base-cased")
+    >>> model = TFAutoModelWithLMHead.from_pretrained("xlnet-base-cased", return_dict=True)
     >>> tokenizer = AutoTokenizer.from_pretrained("xlnet-base-cased")
 
     >>> # Padding text helps XLNet with short prompts - proposed by Aman Rusia in https://github.com/rusiaaman/XLNet-gen#methodology
@@ -659,7 +659,7 @@ Here is an example of doing named entity recognition, using a model and a tokeni
     >>> from transformers import AutoModelForTokenClassification, AutoTokenizer
     >>> import torch
 
-    >>> model = AutoModelForTokenClassification.from_pretrained("dbmdz/bert-large-cased-finetuned-conll03-english")
+    >>> model = AutoModelForTokenClassification.from_pretrained("dbmdz/bert-large-cased-finetuned-conll03-english", return_dict=True)
     >>> tokenizer = AutoTokenizer.from_pretrained("bert-base-cased")
 
     >>> label_list = [
@@ -687,7 +687,7 @@ Here is an example of doing named entity recognition, using a model and a tokeni
     >>> from transformers import TFAutoModelForTokenClassification, AutoTokenizer
     >>> import tensorflow as tf
 
-    >>> model = TFAutoModelForTokenClassification.from_pretrained("dbmdz/bert-large-cased-finetuned-conll03-english")
+    >>> model = TFAutoModelForTokenClassification.from_pretrained("dbmdz/bert-large-cased-finetuned-conll03-english", return_dict=True)
     >>> tokenizer = AutoTokenizer.from_pretrained("bert-base-cased")
 
     >>> label_list = [
@@ -781,7 +781,7 @@ In this example we use Google`s T5 model. Even though it was pre-trained only on
     >>> ## PYTORCH CODE
     >>> from transformers import AutoModelWithLMHead, AutoTokenizer
 
-    >>> model = AutoModelWithLMHead.from_pretrained("t5-base")
+    >>> model = AutoModelWithLMHead.from_pretrained("t5-base", return_dict=True)
     >>> tokenizer = AutoTokenizer.from_pretrained("t5-base")
 
     >>> # T5 uses a max_length of 512 so we cut the article to 512 tokens.
@@ -790,7 +790,7 @@ In this example we use Google`s T5 model. Even though it was pre-trained only on
     >>> ## TENSORFLOW CODE
     >>> from transformers import TFAutoModelWithLMHead, AutoTokenizer
 
-    >>> model = TFAutoModelWithLMHead.from_pretrained("t5-base")
+    >>> model = TFAutoModelWithLMHead.from_pretrained("t5-base", return_dict=True)
     >>> tokenizer = AutoTokenizer.from_pretrained("t5-base")
 
     >>> # T5 uses a max_length of 512 so we cut the article to 512 tokens.
@@ -834,7 +834,7 @@ Here is an example of doing translation using a model and a tokenizer. The proce
     >>> ## PYTORCH CODE
     >>> from transformers import AutoModelWithLMHead, AutoTokenizer
 
-    >>> model = AutoModelWithLMHead.from_pretrained("t5-base")
+    >>> model = AutoModelWithLMHead.from_pretrained("t5-base", return_dict=True)
     >>> tokenizer = AutoTokenizer.from_pretrained("t5-base")
 
     >>> inputs = tokenizer.encode("translate English to German: Hugging Face is a technology company based in New York and Paris", return_tensors="pt")
@@ -842,7 +842,7 @@ Here is an example of doing translation using a model and a tokenizer. The proce
     >>> ## TENSORFLOW CODE
     >>> from transformers import TFAutoModelWithLMHead, AutoTokenizer
 
-    >>> model = TFAutoModelWithLMHead.from_pretrained("t5-base")
+    >>> model = TFAutoModelWithLMHead.from_pretrained("t5-base", return_dict=True)
     >>> tokenizer = AutoTokenizer.from_pretrained("t5-base")
 
     >>> inputs = tokenizer.encode("translate English to German: Hugging Face is a technology company based in New York and Paris", return_tensors="tf")

examples/README.md

@@ -23,11 +23,11 @@ This is still a work-in-progress – in particular documentation is still sparse
 | [**`multiple-choice`**](https://github.com/huggingface/transformers/tree/master/examples/multiple-choice)           | SWAG, RACE, ARC | ✅ | ✅ | -  | [![Open In Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/ViktorAlm/notebooks/blob/master/MPC_GPU_Demo_for_TF_and_PT.ipynb)
 | [**`question-answering`**](https://github.com/huggingface/transformers/tree/master/examples/question-answering)     | SQuAD           | ✅ | ✅ | -  | -
 | [**`text-generation`**](https://github.com/huggingface/transformers/tree/master/examples/text-generation)           | -               | n/a | n/a | n/a | [![Open In Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/huggingface/blog/blob/master/notebooks/02_how_to_generate.ipynb)
-| [**`distillation`**](https://github.com/huggingface/transformers/tree/master/examples/distillation)       | All               | -  | -  | -  | -
-| [**`summarization`**](https://github.com/huggingface/transformers/tree/master/examples/seq2seq)     | CNN/Daily Mail    | -  | -  | ✅  | -
-| [**`translation`**](https://github.com/huggingface/transformers/tree/master/examples/seq2seq)         | WMT               | -  | -  | ✅  | -
-| [**`bertology`**](https://github.com/huggingface/transformers/tree/master/examples/bertology)             | -                 | -  | -  | -  | -
-| [**`adversarial`**](https://github.com/huggingface/transformers/tree/master/examples/adversarial)         | HANS              | ✅ | -  | -  | -
+| [**`distillation`**](https://github.com/huggingface/transformers/tree/master/examples/distillation)                 | All             | - | -  | -  | -
+| [**`summarization`**](https://github.com/huggingface/transformers/tree/master/examples/seq2seq)                     | CNN/Daily Mail  | ✅  | -  | ✅  | -
+| [**`translation`**](https://github.com/huggingface/transformers/tree/master/examples/seq2seq)                       | WMT             | ✅  | -  | ✅  | -
+| [**`bertology`**](https://github.com/huggingface/transformers/tree/master/examples/bertology)                       | -               | - | -  | -  | -
+| [**`adversarial`**](https://github.com/huggingface/transformers/tree/master/examples/adversarial)                   | HANS            | ✅ | -  | -  | -
 
 
 <br>
@@ -47,9 +47,7 @@ pip install -r ./examples/requirements.txt
 
 ## One-click Deploy to Cloud (wip)
 
-#### Azure
-
-[![Deploy to Azure](https://aka.ms/deploytoazurebutton)](https://portal.azure.com/#create/Microsoft.Template/uri/https%3A%2F%2Fraw.githubusercontent.com%2FAzure%2Fazure-quickstart-templates%2Fmaster%2F101-storage-account-create%2Fazuredeploy.json)
+**Coming soon!**
 
 ## Running on TPUs
 

examples/rag/README.md

@@ -1,24 +1,28 @@
 # Intro
-RAG is a seq2seq model which encapsulates two core components: a question encoder and a generator.
+Aimed at tackling the knowledge-intensive NLP tasks (think tasks a human wouldn't be expected to solve without access to external knowledge sources), RAG models are seq2seq models with access to a retrieval mechanism providing relevant context documents at training and evaluation time.
+
+A RAG model encapsulates two core components: a question encoder and a generator.
 During a forward pass, we encode the input with the question encoder and pass it
 to the retriever to extract relevant context documents. The documents are then prepended to the input.
-Such contextualized inputs is passed to the generator.
-
-The question encoder can be any `autoencoding` model, preferably :obj:`~transformers.DPRQuestionEncoder`, and the generator can be any `seq2seq` model, preferably :obj:`~transformers.BartForConditionalGeneration`.
-
-The model can be initialized with a :obj:`~transformers.RagRetriever` for end-to-end generation or used in combination with the outputs of a retriever in multiple steps - see examples for more details.
-The model is compatible any `autoencoding` model as the ``question_encoder`` and any `seq2seq` model with language model head as the ``generator``.
-The model has been tested with :class:`~transformers.DPRQuestionEncoder` as the ``question_encoder`` and :class:`~transformers.BartForConditionalGeneration` or :class:`~transformers.T5ForConditionalGeneration` as the ``generator``.
-
-RAG models were released with the paper `Retrieval-Augmented Generation for
-Knowledge-Intensive NLP Tasks <https://arxiv.org/abs/2005.11401>`_ by Patrick Lewis, Ethan Perez, Aleksandra Piktus et al.
-
+Such contextualized inputs are passed to the generator.
 
+Read more about RAG  at https://arxiv.org/abs/2005.11401.
 # Finetuning
-Our finetuning logic is based on scripts from [`examples/seq2seq`](https://github.com/huggingface/transformers/tree/master/examples/seq2seq).
-Follow instructions there regarding data preprocessing. A sample finetuning command:
 
+
+Our finetuning logic is based on scripts from [`examples/seq2seq`](https://github.com/huggingface/transformers/tree/master/examples/seq2seq). We accept training data in the same format as specified there - we expect a directory consisting of 6 text files:
+```bash
+train.source
+train.target
+val.source
+val.target
+test.source
+test.target
 ```
+
+A sample finetuning command (run ` ./examples/rag/finetune.py --help` to list all available options):
+
+```bash
 python examples/rag/finetune.py \
     --data_dir $DATA_DIR \
     --output_dir $OUTPUT_DIR \
@@ -27,62 +31,85 @@ python examples/rag/finetune.py \
     --fp16 \
     --gpus 8
 ```
+We publish two `base` models which can serve as a starting point for finetuning on downstream tasks (use them as `model_name_or_path`):
+- [`facebook/rag-sequence-base`](https://huggingface.co/facebook/rag-sequence-base) - a base for finetuning `RagSequenceForGeneration` models,
+- [`facebook/rag-token-base`](https://huggingface.co/facebook/rag-token-base) - a base for finetuning `RagTokenForGeneration` models.
+
+The `base` models initialize the question encoder with [`facebook/dpr-question_encoder-single-nq-base`](https://huggingface.co/facebook/dpr-question_encoder-single-nq-base) and the generator with [`facebook/bart-large`](https://huggingface.co/facebook/bart-large).
+
+If you would like to initialize finetuning with a base model using different question encoder and generator architectures, you can build it with a consolidation script, e.g.:
+```
+python examples/rag/consolidate_rag_checkpoint.py \
+    --model_type rag_sequence \
+    --generator_name_or_path facebook/bart-large-cnn \
+    --question_encoder_name_or_path facebook/dpr-question_encoder-single-nq-base \
+    --dest path/to/checkpoint
+```
+You will then be able to pass `path/to/checkpoint` as `model_name_or_path` to the `finetune.py` script.
 
 
 # Evaluation
-Apart from the parameters specifying the model to evaluate and some extra parameters, the evaluation script expects paths to two files:
-- `evaluation_set` - a path to a file specifying the evaluation dataset, a single datapoint per line, e.g.
-```who is the owner of reading football club```
-- `gold_data_path` - a path to a file contaning ground truth answers for datapoints from the `evaluation_set`.
+Our evaluation script enables two modes of evaluation (controlled by the `eval_mode` argument): `e2e` - end2end evaluation, returns EM (exact match) and F1 scores calculated for the downstream task and `retrieval` - which returns precision@k of the documents retrieved for provided inputs.
 
-We expect the following formats of the gold data file:
+The evaluation script expects paths to two files:
+- `evaluation_set` - a path to a file specifying the evaluation dataset, a single input per line.
+- `gold_data_path` - a path to a file contaning ground truth answers for datapoints from the `evaluation_set`, a single output per line. Check below for expected formats of the gold data files.
 
-- for e2e evaluation, we support two formats of the gold file:
-    - `qa` - where a single line in the following format: input [tab] output_list, e.g.:
-    ```
-    who is the owner of reading football club	['Xiu Li Dai', 'Dai Yongge', 'Dai Xiuli', 'Yongge Dai']
-    ```
-    - `ans` - where a single line of the gold file contains the expected output string, e.g.:
-    ```
-    Xiu Li Dai
-    ```
 
-- for retrieval evaluation, we expect a tab-separated list of Wikipedia page titles constituting positive contexts for a given query, e.g. given a question `who sings does he love me with reba`, a line with ground truth retrieval data could look as follows:
+## Retrieval evaluation
+For `retrieval` evaluation, we expect a gold data file where each line will consist of a tab-separated list of document titles constituting positive contexts for respective datapoints from the `evaluation_set`. E.g. given a question `who sings does he love me with reba` in the `evaluation_set`, a respective ground truth line could look as follows:
 ```
 Does He Love You	Does He Love You	Red Sandy Spika dress of Reba McEntire	Greatest Hits Volume Two (Reba McEntire album)	Shoot for the Moon (album)
 ```
 
-## Retrieval evaluation
-
 We demonstrate how to evaluate retrieval against DPR evaluation data. You can download respective files from links listed [here](https://github.com/facebookresearch/DPR/blob/master/data/download_data.py#L39-L45).
 
 1. Download and unzip the gold data file. We use the `biencoder-nq-dev` from https://dl.fbaipublicfiles.com/dpr/data/retriever/biencoder-nq-dev.json.gz.
 2. Parse the unziped file using the `parse_dpr_relevance_data.py`
-```
-python examples/rag/parse_dpr_relevance_data.py --src_path path/to/unziped/biencoder-nq-dev.json --evaluation_set path/to/output/biencoder-nq-dev.questions --gold_data_path path/to/output/biencoder-nq-dev.pages
-```
+    ```bash
+    python examples/rag/parse_dpr_relevance_data.py \
+        --src_path path/to/unziped/biencoder-nq-dev.json \
+        --evaluation_set path/to/output/biencoder-nq-dev.questions \
+        --gold_data_path path/to/output/biencoder-nq-dev.pages
+    ```
 3. Run evaluation:
-```
-python examples/rag/eval_rag.py \
-    --model_name_or_path $MODEL_NAME_OR_PATH \ # model name or path of the model we're evaluating
-    --model_type rag_sequence \ # RAG model type (rag_token or rag_sequence)
-    --evaluation_set path/to/output/biencoder-nq-dev.questions \ # an input dataset for evaluation
-    --gold_data_path path/to/output/biencoder-nq-dev.pages \ # a dataset containing ground truth answers for samples from the evaluation_set
-    --predictions_path path/to/retrieval_preds.tsv  \ # name of file in which predictions will be stored
-    --eval_mode retrieval \ # indicates whether we're performing retrieval evaluation or e2e evaluation
-    --recalculate # if predictions_filename already exists, and this option is set - we regenerate the answers, otherwise we reuse the predicsion file to calculate metrics.
-```
+    ```bash
+    python examples/rag/eval_rag.py \
+        --model_name_or_path facebook/rag-sequence-nq \ # model name or path of the model we're evaluating
+        --model_type rag_sequence \ # RAG model type (rag_token or rag_sequence)
+        --evaluation_set path/to/output/biencoder-nq-dev.questions \ # an input dataset for evaluation
+        --gold_data_path path/to/output/biencoder-nq-dev.pages \ # a dataset containing ground truth answers for samples from the evaluation_set
+        --predictions_path path/to/retrieval_preds.tsv  \ # name of file where predictions will be stored
+        --eval_mode retrieval \ # indicates whether we're performing retrieval evaluation or e2e evaluation
+        --k 1 # parameter k for the precision@k metric
+    ```
 
 
 ## End-to-end evaluation
+
+We support two formats of the gold data file (controlled by the `gold_data_mode` parameter):
+- `qa` - where a single line has the following format: `input [tab] output_list`, e.g.:
 ```
+who is the owner of reading football club	['Xiu Li Dai', 'Dai Yongge', 'Dai Xiuli', 'Yongge Dai']
+```
+- `ans` - where a single line contains a single expected answer, e.g.:
+```
+Xiu Li Dai
+```
+
+Predictions of the model for the samples from the `evaluation_set` will be saved under the path specified by the `predictions_path` parameter. If this path already exists, the script will use saved predictions to calculate metrics. Add `--recalculate` parameter to force the script to perform inference from scratch.
+
+An example e2e evaluation run could look as follows:
+```bash
 python examples/rag/eval_rag.py \
-	--model_name_or_path $MODEL_NAME_OR_PATH \
+    --model_name_or_path facebook/rag-sequence-nq \
     --model_type rag_sequence \
     --evaluation_set path/to/test.source \
     --gold_data_path path/to/gold_data \
     --predictions_path path/to/e2e_preds.txt \
-    --eval_mode e2e \ # indicates whether we're performing retrieval evaluation or e2e evaluation (default)
+    --eval_mode e2e \
+    --gold_data_mode qa \
     --n_docs 5 \ # You can experiment with retrieving different number of documents at evaluation time
-    --print_predictions
+    --print_predictions \
+    --recalculate \ # adding this parameter will force recalculating predictions even if predictions_path already exists
 ```

examples/rag/callbacks.py

@@ -1,7 +1,20 @@
 import logging
 import os
+from pathlib import Path
 
-from pytorch_lightning.callbacks import ModelCheckpoint
+import numpy as np
+import pytorch_lightning as pl
+import torch
+from pytorch_lightning.callbacks import EarlyStopping, ModelCheckpoint
+from pytorch_lightning.utilities import rank_zero_only
+
+from utils import save_json
+
+
+def count_trainable_parameters(model):
+    model_parameters = filter(lambda p: p.requires_grad, model.parameters())
+    params = sum([np.prod(p.size()) for p in model_parameters])
+    return params
 
 
 logger = logging.getLogger(__name__)
@@ -28,3 +41,76 @@ def get_checkpoint_callback(output_dir, metric):
         period=0,  # maybe save a checkpoint every time val is run, not just end of epoch.
     )
     return checkpoint_callback
+
+
+def get_early_stopping_callback(metric, patience):
+    return EarlyStopping(
+        monitor=f"val_{metric}",  # does this need avg?
+        mode="min" if "loss" in metric else "max",
+        patience=patience,
+        verbose=True,
+    )
+
+
+class Seq2SeqLoggingCallback(pl.Callback):
+    def on_batch_end(self, trainer, pl_module):
+        lrs = {f"lr_group_{i}": param["lr"] for i, param in enumerate(pl_module.trainer.optimizers[0].param_groups)}
+        pl_module.logger.log_metrics(lrs)
+
+    @rank_zero_only
+    def _write_logs(
+        self, trainer: pl.Trainer, pl_module: pl.LightningModule, type_path: str, save_generations=True
+    ) -> None:
+        logger.info(f"***** {type_path} results at step {trainer.global_step:05d} *****")
+        metrics = trainer.callback_metrics
+        trainer.logger.log_metrics({k: v for k, v in metrics.items() if k not in ["log", "progress_bar", "preds"]})
+        # Log results
+        od = Path(pl_module.hparams.output_dir)
+        if type_path == "test":
+            results_file = od / "test_results.txt"
+            generations_file = od / "test_generations.txt"
+        else:
+            # this never gets hit. I prefer not to save intermediate generations, and results are in metrics.json
+            # If people want this it will be easy enough to add back.
+            results_file = od / f"{type_path}_results/{trainer.global_step:05d}.txt"
+            generations_file = od / f"{type_path}_generations/{trainer.global_step:05d}.txt"
+            results_file.parent.mkdir(exist_ok=True)
+            generations_file.parent.mkdir(exist_ok=True)
+        with open(results_file, "a+") as writer:
+            for key in sorted(metrics):
+                if key in ["log", "progress_bar", "preds"]:
+                    continue
+                val = metrics[key]
+                if isinstance(val, torch.Tensor):
+                    val = val.item()
+                msg = f"{key}: {val:.6f}\n"
+                writer.write(msg)
+
+        if not save_generations:
+            return
+
+        if "preds" in metrics:
+            content = "\n".join(metrics["preds"])
+            generations_file.open("w+").write(content)
+
+    @rank_zero_only
+    def on_train_start(self, trainer, pl_module):
+        try:
+            npars = pl_module.model.model.num_parameters()
+        except AttributeError:
+            npars = pl_module.model.num_parameters()
+
+        n_trainable_pars = count_trainable_parameters(pl_module)
+        # mp stands for million parameters
+        trainer.logger.log_metrics({"n_params": npars, "mp": npars / 1e6, "grad_mp": n_trainable_pars / 1e6})
+
+    @rank_zero_only
+    def on_test_end(self, trainer: pl.Trainer, pl_module: pl.LightningModule):
+        save_json(pl_module.metrics, pl_module.metrics_save_path)
+        return self._write_logs(trainer, pl_module, "test")
+
+    @rank_zero_only
+    def on_validation_end(self, trainer: pl.Trainer, pl_module):
+        save_json(pl_module.metrics, pl_module.metrics_save_path)
+        # Uncommenting this will save val generations
+        # return self._write_logs(trainer, pl_module, "valid")

examples/rag/consolidate_rag_checkpoint.py

@@ -0,0 +1,99 @@
+"""
+A script creating a RAG checkpoint from a generator and a question encoder checkpoints.
+"""
+
+import argparse
+from pathlib import Path
+
+from transformers import AutoConfig, AutoTokenizer, RagConfig, RagSequenceForGeneration, RagTokenForGeneration
+
+
+def consolidate(
+    model_type,
+    generator_name_or_path: str,
+    question_encoder_name_or_path: str,
+    dest_dir: Path,
+    config_name_or_path: str = None,
+    generator_tokenizer_name_or_path: str = None,
+    question_encoder_tokenizer_name_or_path: str = None,
+):
+
+    if config_name_or_path is None:
+        config_name_or_path = "facebook/rag-token-base" if model_type == "rag_token" else "facebook/rag-sequence-base"
+
+    if generator_tokenizer_name_or_path is None:
+        generator_tokenizer_name_or_path = generator_name_or_path
+
+    if question_encoder_tokenizer_name_or_path is None:
+        question_encoder_tokenizer_name_or_path = question_encoder_name_or_path
+
+    model_class = RagTokenForGeneration if model_type == "rag_token" else RagSequenceForGeneration
+
+    # Save model.
+    rag_config = RagConfig.from_pretrained(config_name_or_path)
+    gen_config = AutoConfig.from_pretrained(generator_name_or_path)
+    question_encoder_config = AutoConfig.from_pretrained(question_encoder_name_or_path)
+
+    rag_config.generator = gen_config
+    rag_config.question_encoder = question_encoder_config
+
+    rag_model = model_class.from_pretrained_question_encoder_generator(
+        question_encoder_name_or_path, generator_name_or_path, config=rag_config
+    )
+    rag_model.save_pretrained(dest_dir)
+
+    # Sanity check.
+    model_class.from_pretrained(dest_dir)
+
+    # Save tokenizers.
+    gen_tokenizer = AutoTokenizer.from_pretrained(generator_tokenizer_name_or_path)
+    gen_tokenizer.save_pretrained(dest_dir / "generator_tokenizer/")
+    question_encoder_tokenizer = AutoTokenizer.from_pretrained(question_encoder_tokenizer_name_or_path)
+    question_encoder_tokenizer.save_pretrained(dest_dir / "question_encoder_tokenizer/")
+
+
+if __name__ == "__main__":
+    parser = argparse.ArgumentParser()
+    parser.add_argument(
+        "--model_type",
+        choices=["rag_sequence", "rag_token"],
+        required=True,
+        type=str,
+        help="RAG model type: rag_sequence, rag_token",
+    )
+    parser.add_argument("--dest", type=str, required=True, help="Path to the output checkpoint directory.")
+    parser.add_argument("--generator_name_or_path", type=str, required=True, help="Generator model identifier")
+    parser.add_argument(
+        "--question_encoder_name_or_path", type=str, required=True, help="Question encoder model identifier"
+    )
+
+    parser.add_argument(
+        "--generator_tokenizer_name_or_path",
+        type=str,
+        help="Generator tokenizer identifier, if not specified, resolves to ``generator_name_or_path``",
+    )
+    parser.add_argument(
+        "--question_encoder_tokenizer_name_or_path",
+        type=str,
+        help="Question encoder tokenizer identifier, if not specified, resolves to ``question_encoder_name_or_path``",
+    )
+    parser.add_argument(
+        "--config_name_or_path",
+        type=str,
+        help="Identifier of the model config to use, if not provided, resolves to a base config for a given ``model_type``",
+    )
+
+    args = parser.parse_args()
+
+    dest_dir = Path(args.dest)
+    dest_dir.mkdir(exist_ok=True)
+
+    consolidate(
+        args.model_type,
+        args.generator_name_or_path,
+        args.question_encoder_name_or_path,
+        dest_dir,
+        args.config_name_or_path,
+        args.generator_tokenizer_name_or_path,
+        args.question_encoder_tokenizer_name_or_path,
+    )

examples/rag/eval_rag.py

@@ -115,11 +115,15 @@ def evaluate_batch_retrieval(args, rag_model, questions):
 
 def evaluate_batch_e2e(args, rag_model, questions):
     with torch.no_grad():
-        input_ids = rag_model.retriever.question_encoder_tokenizer.batch_encode_plus(
+        inputs_dict = rag_model.retriever.question_encoder_tokenizer.batch_encode_plus(
             questions, return_tensors="pt", padding=True, truncation=True
-        )["input_ids"].to(args.device)
+        )
+
+        input_ids = inputs_dict.input_ids.to(args.device)
+        attention_mask = inputs_dict.attention_mask.to(args.device)
         outputs = rag_model.generate(  # rag_model overwrites generate
             input_ids,
+            attention_mask=attention_mask,
             num_beams=args.num_beams,
             min_length=args.min_length,
             max_length=args.max_length,

examples/rag/finetune.py

@@ -34,22 +34,23 @@ from transformers import logging as transformers_logging
 sys.path.append(os.path.join(os.getcwd()))  # noqa: E402 # noqa: E402 # isort:skip
 
 from examples.lightning_base import BaseTransformer, add_generic_args, generic_train  # noqa: E402 # isort:skip
-from examples.rag.callbacks import get_checkpoint_callback  # noqa: E402 # isort:skip
+from examples.rag.callbacks import (  # noqa: E402 # isort:skip
+    get_checkpoint_callback,
+    get_early_stopping_callback,
+    Seq2SeqLoggingCallback,
+)
 from examples.rag.distributed_retriever import RagPyTorchDistributedRetriever  # noqa: E402 # isort:skip
 from examples.rag.utils import (  # noqa: E402 # isort:skip
-    Seq2SeqDataset,
     calculate_exact_match,
-    is_rag_model,
-    set_extra_model_params,
-)
-from examples.seq2seq.callbacks import Seq2SeqLoggingCallback, get_early_stopping_callback  # noqa: E402 # isort:skip
-from examples.seq2seq.utils import (  # noqa: E402 # isort:skip
     flatten_list,
     get_git_info,
+    is_rag_model,
     lmap,
     pickle_save,
     save_git_info,
     save_json,
+    set_extra_model_params,
+    Seq2SeqDataset,
 )
 
 logging.basicConfig(level=logging.INFO)
@@ -265,6 +266,7 @@ class GenerativeQAModule(BaseTransformer):
         start_time = time.time()
         generated_ids = self.model.generate(
             batch["input_ids"],
+            attention_mask=batch["attention_mask"],
             do_deduplication=False,  # rag specific parameter
             use_cache=True,
             min_length=1,
@@ -302,11 +304,6 @@ class GenerativeQAModule(BaseTransformer):
 
     def get_dataloader(self, type_path: str, batch_size: int, shuffle: bool = False) -> DataLoader:
         dataset = self.get_dataset(type_path)
-        sampler = None
-        if self.hparams.sortish_sampler and type_path == "train":
-            assert self.hparams.gpus <= 1  # TODO: assert earlier
-            sampler = dataset.make_sortish_sampler(batch_size)
-            shuffle = False
 
         dataloader = DataLoader(
             dataset,
@@ -314,7 +311,6 @@ class GenerativeQAModule(BaseTransformer):
             collate_fn=dataset.collate_fn,
             shuffle=shuffle,
             num_workers=self.num_workers,
-            sampler=sampler,
         )
         return dataloader
 
@@ -378,7 +374,6 @@ class GenerativeQAModule(BaseTransformer):
             help="The maximum total input sequence length after tokenization. Sequences longer "
             "than this will be truncated, sequences shorter will be padded.",
         )
-        parser.add_argument("--sortish_sampler", action="store_true", default=False)
         parser.add_argument("--logger_name", type=str, choices=["default", "wandb", "wandb_shared"], default="default")
         parser.add_argument("--n_train", type=int, default=-1, required=False, help="# examples. -1 means use all.")
         parser.add_argument("--n_val", type=int, default=-1, required=False, help="# examples. -1 means use all.")

examples/rag/test_distributed_retriever.py

@@ -153,4 +153,4 @@ class RagRetrieverTest(TestCase):
         self.assertEqual(len(doc_dicts[0]["id"]), n_docs)
         self.assertEqual(doc_dicts[0]["id"][0], "1")  # max inner product is reached with second doc
         self.assertEqual(doc_dicts[1]["id"][0], "0")  # max inner product is reached with first doc
-        self.assertListEqual(list(doc_ids), [1, 0])
+        self.assertListEqual(doc_ids.tolist(), [[1], [0]])

examples/rag/utils.py

@@ -1,15 +1,20 @@
+import itertools
+import json
 import linecache
+import os
+import pickle
 import re
+import socket
 import string
 from collections import Counter
 from logging import getLogger
 from pathlib import Path
-from typing import Dict, List
+from typing import Callable, Dict, Iterable, List
 
+import git
 import torch
 from torch.utils.data import Dataset
 
-from examples.seq2seq.utils import SortishSampler, trim_batch
 from transformers import BartTokenizer, RagTokenizer, T5Tokenizer
 
 
@@ -27,6 +32,19 @@ def encode_line(tokenizer, line, max_length, padding_side, pad_to_max_length=Tru
     )
 
 
+def trim_batch(
+    input_ids,
+    pad_token_id,
+    attention_mask=None,
+):
+    """Remove columns that are populated exclusively by pad_token_id"""
+    keep_column_mask = input_ids.ne(pad_token_id).any(dim=0)
+    if attention_mask is None:
+        return input_ids[:, keep_column_mask]
+    else:
+        return (input_ids[:, keep_column_mask], attention_mask[:, keep_column_mask])
+
+
 class Seq2SeqDataset(Dataset):
     def __init__(
         self,
@@ -114,13 +132,52 @@ class Seq2SeqDataset(Dataset):
         }
         return batch
 
-    def make_sortish_sampler(self, batch_size):
-        return SortishSampler(self.src_lens, batch_size)
-
 
 logger = getLogger(__name__)
 
 
+def flatten_list(summary_ids: List[List]):
+    return [x for x in itertools.chain.from_iterable(summary_ids)]
+
+
+def save_git_info(folder_path: str) -> None:
+    """Save git information to output_dir/git_log.json"""
+    repo_infos = get_git_info()
+    save_json(repo_infos, os.path.join(folder_path, "git_log.json"))
+
+
+def save_json(content, path, indent=4, **json_dump_kwargs):
+    with open(path, "w") as f:
+        json.dump(content, f, indent=indent, **json_dump_kwargs)
+
+
+def load_json(path):
+    with open(path) as f:
+        return json.load(f)
+
+
+def get_git_info():
+    repo = git.Repo(search_parent_directories=True)
+    repo_infos = {
+        "repo_id": str(repo),
+        "repo_sha": str(repo.head.object.hexsha),
+        "repo_branch": str(repo.active_branch),
+        "hostname": str(socket.gethostname()),
+    }
+    return repo_infos
+
+
+def lmap(f: Callable, x: Iterable) -> List:
+    """list(map(f, x))"""
+    return list(map(f, x))
+
+
+def pickle_save(obj, path):
+    """pickle.dump(obj, path)"""
+    with open(path, "wb") as f:
+        return pickle.dump(obj, f)
+
+
 def normalize_answer(s):
     """Lower text and remove punctuation, articles and extra whitespace."""
 

examples/requirements.txt

@@ -11,6 +11,7 @@ git-python==1.0.3
 faiss-cpu
 streamlit
 elasticsearch
+nltk
 pandas
 datasets
 fire

examples/seq2seq/README.md

@@ -19,7 +19,7 @@ For `bertabs` instructions, see [`bertabs/README.md`](bertabs/README.md).
 #### XSUM:
 ```bash
 cd examples/seq2seq
-wget https://s3.amazonaws.com/datasets.huggingface.co/summarization/xsum.tar.gz
+wget https://cdn-datasets.huggingface.co/summarization/xsum.tar.gz
 tar -xzvf xsum.tar.gz
 export XSUM_DIR=${PWD}/xsum
 ```
@@ -29,7 +29,7 @@ To use your own data, copy that files format. Each article to be summarized is o
 #### CNN/DailyMail
 ```bash
 cd examples/seq2seq
-wget https://s3.amazonaws.com/datasets.huggingface.co/summarization/cnn_dm_v2.tgz
+wget https://cdn-datasets.huggingface.co/summarization/cnn_dm_v2.tgz
 tar -xzvf cnn_dm_v2.tgz  # empty lines removed
 mv cnn_cln cnn_dm
 export CNN_DIR=${PWD}/cnn_dm
@@ -39,7 +39,7 @@ this should make a directory called `cnn_dm/` with 6 files.
 #### WMT16 English-Romanian Translation Data:
 download with this command:
 ```bash
-wget https://s3.amazonaws.com/datasets.huggingface.co/translation/wmt_en_ro.tar.gz
+wget https://cdn-datasets.huggingface.co/translation/wmt_en_ro.tar.gz
 tar -xzvf wmt_en_ro.tar.gz
 export ENRO_DIR=${PWD}/wmt_en_ro
 ```
@@ -47,7 +47,7 @@ this should make a directory called `wmt_en_ro/` with 6 files.
 
 #### WMT English-German:
 ```bash
-wget https://s3.amazonaws.com/datasets.huggingface.co/translation/wmt_en_de.tgz
+wget https://cdn-datasets.huggingface.co/translation/wmt_en_de.tgz
 tar -xzvf wmt_en_de.tgz
 export DATA_DIR=${PWD}/wmt_en_de
 ```
@@ -100,7 +100,7 @@ All finetuning bash scripts call finetune.py (or distillation.py) with reasonabl
 To see all the possible command line options, run:
 
 ```bash
-./finetune.sh --help  # this calls python finetune.py --help
+ ./finetune.py --help 
 ```
 
 ### Finetuning Training Params
@@ -189,6 +189,36 @@ from transformers import AutoModelForSeq2SeqLM
 model = AutoModelForSeq2SeqLM.from_pretrained(f'{output_dir}/best_tfmr')
 ```
 
+### Fine-tuning using Seq2SeqTrainer
+To use `Seq2SeqTrainer` for fine-tuning you should use the `finetune_trainer.py` script. It subclasses `Trainer` to extend it for seq2seq training. Except the `Trainer` releated `TrainingArguments`, it shares the same argument names as that of `finetune.py` file. One notable difference is that, calculating generative metrics (BLEU, ROUGE) is optional and is controlled using the `--predict_with_generate` argument, set this argument to calculate BLEU and ROUGE metrics.
+
+With PyTorch 1.6+ it'll automatically use `native AMP` when `--fp16` is set. 
+
+To see all the possible command line options, run:
+
+```bash
+./builtin_trainer/finetune.sh --help # This calls python finetune_trainer.py --help
+```
+
+**At the moment, `Seq2SeqTrainer` does not support *with teacher* distillation.**
+
+All `Seq2SeqTrainer` based fine-tuning scripts are included in the `builtin_trainer` directory.
+
+#### TPU Training
+`Seq2SeqTrainer` supports TPU training with few caveats
+1. As `generate` method does not work on TPU at the moment, `predict_with_generate` can not be used. You should use `--prediction_loss_only` to only calculate loss, and do not set `--do_predict` and `--predict_with_generate`.
+2. All sequences should be padded to be of equal length otherwise it leads to extremely slow training. (`finetune_trainer.py` does this automatically when running on TPU.)
+
+We provide a very simple launcher script named `xla_spawn.py` that lets you run our example scripts on multiple TPU cores without any boilerplate. Just pass a --num_cores flag to this script, then your regular training script with its arguments (this is similar to the torch.distributed.launch helper for torch.distributed).
+
+`builtin_trainer/finetune_tpu.sh` script provides minimal arguments needed for TPU training.
+
+Following command fine-tunes `sshleifer/student_marian_en_ro_6_3` on TPU V3-8 and should complete one epoch in ~5-6 mins.
+
+```bash
+./builtin_trainer/train_distil_marian_enro_tpu.sh
+```
+
 ### Evaluation Commands
 
 To create summaries for each article in dataset, we use `run_eval.py`, here are a few commands that run eval for different tasks and models.
@@ -197,7 +227,7 @@ If 'translation' is in your task name, the computed metric will be BLEU. Otherwi
 For t5, you need to specify --task translation_{src}_to_{tgt} as follows:
 ```bash
 export DATA_DIR=wmt_en_ro
-python run_eval.py t5-base \
+./run_eval.py t5-base \
     $DATA_DIR/val.source t5_val_generations.txt \
     --reference_path $DATA_DIR/val.target \
     --score_path enro_bleu.json \
@@ -211,7 +241,7 @@ python run_eval.py t5-base \
 This command works for MBART, although the BLEU score is suspiciously low.
 ```bash
 export DATA_DIR=wmt_en_ro
-python run_eval.py facebook/mbart-large-en-ro $DATA_DIR/val.source mbart_val_generations.txt \
+./run_eval.py facebook/mbart-large-en-ro $DATA_DIR/val.source mbart_val_generations.txt \
     --reference_path $DATA_DIR/val.target \
     --score_path enro_bleu.json \
     --task translation \
@@ -224,7 +254,7 @@ python run_eval.py facebook/mbart-large-en-ro $DATA_DIR/val.source mbart_val_gen
 Summarization (xsum will be very similar):
 ```bash
 export DATA_DIR=cnn_dm
-python run_eval.py sshleifer/distilbart-cnn-12-6 $DATA_DIR/val.source dbart_val_generations.txt \
+./run_eval.py sshleifer/distilbart-cnn-12-6 $DATA_DIR/val.source dbart_val_generations.txt \
     --reference_path $DATA_DIR/val.target \
     --score_path cnn_rouge.json \
     --task summarization \
@@ -235,10 +265,10 @@ python run_eval.py sshleifer/distilbart-cnn-12-6 $DATA_DIR/val.source dbart_val_
     --fp16 \
     --bs 32
 ```
-### Multi-GPU Evalulation
+### Multi-GPU Evaluation
 here is a command to run xsum evaluation on 8 GPUS. It is more than linearly faster than run_eval.py in some cases 
 because it uses SortishSampler to minimize padding. You can also use it on 1 GPU. `data_dir` must have 
-`{type_path}.source` and `{type_path}.target`. Run `python run_distributed_eval.py --help` for all clargs.
+`{type_path}.source` and `{type_path}.target`. Run `./run_distributed_eval.py --help` for all clargs.
 
 ```bash
 python -m torch.distributed.launch --nproc_per_node=8  run_distributed_eval.py \
@@ -250,7 +280,7 @@ python -m torch.distributed.launch --nproc_per_node=8  run_distributed_eval.py \
 
 Contributions that implement this command for other distributed hardware setups are welcome!
 
-#### run_eval tips and tricks
+#### Single-GPU Eval: Tips and Tricks
 
 When using `run_eval.py`, the following features can be useful:
 
@@ -339,7 +369,7 @@ runtime: 6H on NVIDIA RTX 24GB GPU
 If you are using `wandb` and comparing the two distillation methods, using this entry point will make your logs consistent,
 because you will have the same hyperparameters logged in every run.
 
-#### With a teacher
+#### With a teacher (Intermediate Supervision)
 *Note* only BART variants are supported
 
 In this method, we use try to enforce that the student and teacher produce similar encoder_outputs, logits, and hidden_states using `BartSummarizationDistiller`.
@@ -348,7 +378,7 @@ This is how `sshleifer/distilbart-xsum*` checkpoints were produced.
 The command that produced `sshleifer/distilbart-xsum-12-6` is:
 
 ```bash
-./train_distilbart_xsum.sh
+./train_distilbart_xsum.sh --logger_name wandb --gpus 1
 ```
 
 runtime: 13H on V-100 16GB GPU.
@@ -371,11 +401,11 @@ This feature can only be used:
 - with fairseq installed
 - on 1 GPU
 - without sortish sampler
-- after calling `python save_len_file.py $tok $data_dir`
+- after calling `./save_len_file.py $tok $data_dir`
 
 For example, 
 ```bash
-python save_len_file.py Helsinki-NLP/opus-mt-en-ro  wmt_en_ro
+./save_len_file.py Helsinki-NLP/opus-mt-en-ro  wmt_en_ro
 ./dynamic_bs_example.sh --max_tokens_per_batch=2000 --output_dir benchmark_dynamic_bs
 ```
 splits `wmt_en_ro/train` into 11,197 uneven lengthed batches and can finish 1 epoch in 8 minutes on a v100.

examples/seq2seq/builtin_trainer/finetune.sh

@@ -0,0 +1,9 @@
+# the proper usage is documented in the README, you need to specify data_dir, output_dir and model_name_or_path
+# run ./builtin_trainer/finetune.sh --help to see all the possible options
+python finetune_trainer.py \
+    --learning_rate=3e-5 \
+    --fp16 \
+    --do_train --do_eval --do_predict --evaluate_during_training \
+    --predict_with_generate \
+    --n_val 1000 \
+    "$@"

examples/seq2seq/builtin_trainer/finetune_tpu.sh

@@ -0,0 +1,11 @@
+export TPU_NUM_CORES=8
+
+# the proper usage is documented in the README, you need to specify data_dir, output_dir and model_name_or_path
+# run ./builtin_trainer/finetune_tpu.sh --help to see all the possible options
+python xla_spawn.py --num_cores $TPU_NUM_CORES \
+    finetune_trainer.py \
+    --learning_rate=3e-5 \
+    --do_train --do_eval --evaluate_during_training \
+    --prediction_loss_only \
+    --n_val 1000 \
+    "$@"

examples/seq2seq/builtin_trainer/train_distil_marian_enro.sh

@@ -0,0 +1,22 @@
+export WANDB_PROJECT=distil-marian
+export BS=64
+export GAS=1
+export m=sshleifer/student_marian_en_ro_6_3
+export MAX_LEN=128
+python finetune_trainer.py \
+    --tokenizer_name $m --model_name_or_path $m \
+    --data_dir $ENRO_DIR \
+    --output_dir marian_en_ro_6_3 --overwrite_output_dir \
+    --learning_rate=3e-4 \
+    --warmup_steps 500 --sortish_sampler \
+    --fp16 \
+    --gradient_accumulation_steps=$GAS \
+    --per_device_train_batch_size=$BS --per_device_eval_batch_size=$BS \
+    --freeze_encoder --freeze_embeds \
+    --num_train_epochs=6 \
+    --save_steps 3000 --eval_steps 3000 \
+    --max_source_length $MAX_LEN --max_target_length $MAX_LEN --val_max_target_length $MAX_LEN --test_max_target_length $MAX_LEN \
+    --do_train --do_eval --do_predict --evaluate_during_training\
+    --predict_with_generate --logging_first_step \
+    --task translation --label_smoothing 0.1 \
+    "$@"

examples/seq2seq/builtin_trainer/train_distil_marian_enro_tpu.sh

@@ -0,0 +1,23 @@
+export WANDB_PROJECT=distil-marian
+export BS=64
+export m=sshleifer/student_marian_en_ro_6_3
+export MAX_LEN=128
+export TPU_NUM_CORES=8
+
+python xla_spawn.py --num_cores $TPU_NUM_CORES \
+    finetune_trainer.py \
+    --tokenizer_name $m --model_name_or_path $m \
+    --data_dir $ENRO_DIR \
+    --output_dir marian_en_ro_6_3 --overwrite_output_dir \
+    --learning_rate=3e-4 \
+    --warmup_steps 500 \
+    --per_device_train_batch_size=$BS --per_device_eval_batch_size=$BS \
+    --freeze_encoder --freeze_embeds \
+    --num_train_epochs=6 \
+    --save_steps 500 --eval_steps 500 \
+    --logging_first_step --logging_steps 200 \
+    --max_source_length $MAX_LEN --max_target_length $MAX_LEN --val_max_target_length $MAX_LEN --test_max_target_length $MAX_LEN \
+    --do_train --do_eval --evaluate_during_training \
+    --prediction_loss_only \
+    --task translation --label_smoothing 0.1 \
+    "$@"

examples/seq2seq/builtin_trainer/train_distilbart_cnn.sh

@@ -0,0 +1,25 @@
+export WANDB_PROJECT=distilbart-cnn
+export BS=32
+export GAS=1
+export m=sshleifer/student_cnn_12_6
+export tok=facebook/bart-large
+export MAX_TGT_LEN=142
+
+python finetune_trainer.py \
+    --model_name_or_path $m --tokenizer_name $tok \ 
+    --data_dir $CNN_DIR \
+    --output_dir distilbart-cnn-12-6 --overwrite_output_dir \
+    --learning_rate=3e-5 \
+    --warmup_steps 500 --sortish_sampler \
+    --fp16 \
+    --n_val 500 \
+    --gradient_accumulation_steps=$GAS \
+    --per_device_train_batch_size=$BS --per_device_eval_batch_size=$BS \
+    --freeze_encoder --freeze_embeds \
+    --num_train_epochs=2 \
+    --save_steps 3000 --eval_steps 3000 \
+    --logging_first_step \
+    --max_target_length 56 --val_max_target_length $MAX_TGT_LEN --test_max_target_length $MAX_TGT_LEN \
+    --do_train --do_eval --do_predict --evaluate_during_training \
+    --predict_with_generate \
+    "$@"

examples/seq2seq/builtin_trainer/train_mbart_cc25_enro.sh

@@ -0,0 +1,21 @@
+python finetune_trainer.py \
+    --model_name_or_path=facebook/mbart-large-cc25 \
+    --data_dir $ENRO_DIR \
+    --output_dir mbart_cc25_enro --overwrite_output_dir \
+    --learning_rate=3e-5 \
+    --warmup_steps 500 \ 
+    --fp16 \
+    --label_smoothing 0.1 \
+    --adam_eps 1e-06 \
+    --src_lang en_XX --tgt_lang ro_RO \
+    --freeze_embeds \
+    --per_device_train_batch_size=4 --per_device_eval_batch_size=4 \
+    --max_source_length 128 --max_target_length 128 \
+    --val_max_target_length 128 --test_max_target_length 128 \
+    --sortish_sampler \
+    --num_train_epochs 6 \
+    --save_steps 25000 --eval_steps 25000 --logging_steps 1000 \
+    --do_train --do_eval --do_predict --evaluate_during_training \
+    --predict_with_generate --logging_first_step 
+    --task translation \
+    "$@"

examples/seq2seq/convert_model_to_fp16.py

@@ -1,3 +1,5 @@
+#!/usr/bin/env python
+
 from typing import Union
 
 import fire

examples/seq2seq/convert_pl_checkpoint_to_hf.py

@@ -1,3 +1,5 @@
+#!/usr/bin/env python
+
 import os
 from pathlib import Path
 from typing import Dict, List

examples/seq2seq/distillation.py

@@ -1,7 +1,9 @@
+#!/usr/bin/env python
+
 import argparse
 import gc
 import os
-import warnings
+import sys
 from pathlib import Path
 from typing import List
 
@@ -12,109 +14,78 @@ from torch.nn import functional as F
 
 from finetune import SummarizationModule, TranslationModule
 from finetune import main as ft_main
-from initialization_utils import copy_layers, init_student
-from lightning_base import generic_train
-from transformers import AutoModelForSeq2SeqLM, MBartTokenizer, T5Config, T5ForConditionalGeneration
+from make_student import create_student_by_copying_alternating_layers, get_layers_to_supervise
+from transformers import AutoModelForSeq2SeqLM, MBartTokenizer, T5ForConditionalGeneration
 from transformers.modeling_bart import shift_tokens_right
-from utils import (
-    any_requires_grad,
-    assert_all_frozen,
-    calculate_bleu,
-    freeze_params,
-    label_smoothed_nll_loss,
-    pickle_load,
-    use_task_specific_params,
-)
+from utils import calculate_bleu, freeze_params, label_smoothed_nll_loss, pickle_load, use_task_specific_params
+
+
+# need the parent dir module
+sys.path.insert(2, str(Path(__file__).resolve().parents[1]))
+from lightning_base import generic_train  # noqa
 
 
 class BartSummarizationDistiller(SummarizationModule):
     """Supports Bart, Pegasus and other models that inherit from Bart."""
 
-    loss_names = ["loss", "ce_loss", "mlm_loss", "enc_mse_loss", "hid_loss_enc", "hid_loss_dec"]
+    loss_names = ["loss", "ce_loss", "mlm_loss", "hid_loss_enc", "hid_loss_dec"]
 
     def __init__(self, hparams):
         assert Path(hparams.data_dir).exists()
-        student, student_cfg, teacher = self.pre_init(hparams)
+        self.output_dir = Path(hparams.output_dir)
+        self.output_dir.mkdir(exist_ok=True)
+
+        save_dir = self.output_dir.joinpath("student")
+
+        hparams.model_name_or_path = str(save_dir)  # Tell lightning we are training the student
+        teacher = AutoModelForSeq2SeqLM.from_pretrained(hparams.teacher).eval()
+        use_task_specific_params(teacher, hparams.task)  # We copy good generation parameters to student by default
+        student, e_layer_ids, d_layer_ids = create_student_by_copying_alternating_layers(
+            teacher, e=hparams.student_encoder_layers, d=hparams.student_decoder_layers, save_path=save_dir
+        )
+        if hparams.length_penalty != -1:
+            student.config.length_penalty = hparams.length_penalty
+        super().__init__(hparams, model=student, config=student.config)
+        model_type = student.config.model_type
+        self.e_layer_ids, self.d_layer_ids = e_layer_ids, d_layer_ids  # type: List[int], List[int]
+
+        if model_type == "t5":
+            teacher_encoder_layers = len(teacher.get_encoder().block)
+            teacher_decoder_layers = len(teacher.get_decoder().block)
+        else:
+            teacher_encoder_layers = teacher.config.encoder_layers
+            teacher_decoder_layers = teacher.config.decoder_layers
+
+        self.different_encoder = hparams.student_encoder_layers != teacher_encoder_layers
+        self.different_decoder = hparams.student_decoder_layers != teacher_decoder_layers
 
-        super().__init__(hparams, model=student, config=student_cfg)
         self.teacher = teacher
-        use_task_specific_params(self.teacher, "summarization")
         freeze_params(self.teacher)
-        self.sanity_check_gradients()
+
+        if not self.different_encoder:  # To save RAM, delete teacher encoder and freeze student encoder.
+            try:
+                del self.teacher.model.encoder
+            except AttributeError:  # T5
+                del self.teacher.encoder
+        # Intermediate supervision: Decide which layers to supervise
+        if hparams.supervise_forward:
+            self.e_matches = get_layers_to_supervise(n_student=len(self.e_layer_ids), n_teacher=teacher_encoder_layers)
+            self.d_matches = get_layers_to_supervise(n_student=len(self.d_layer_ids), n_teacher=teacher_decoder_layers)
+        else:  # student layer should emulate hidden states of the teacher layer it was copied from
+            self.e_matches = self.e_layer_ids
+            self.d_matches = self.d_layer_ids
+
         self.ce_loss_fct = nn.KLDivLoss(reduction="batchmean")
         self.temperature = 2.0
         self.alpha_mlm = hparams.alpha_mlm
         self.alpha_ce = hparams.alpha_ce
         self.alpha_hid = hparams.alpha_hid
-        # self.alpha_cos = hparams.alpha_cos
-        self.alpha_encoder_loss = self.hparams.alpha_encoder_loss
         gc.collect()
         torch.cuda.empty_cache()
 
-    def sanity_check_gradients(self):
-        assert_all_frozen(self.teacher)
-        assert_all_frozen(self.model.model.decoder.embed_tokens)
-        assert_all_frozen(self.model.model.encoder.embed_tokens)
-        if self.different_encoder:
-            assert any_requires_grad(self.model.model.encoder)
-        else:
-            freeze_params(self.model.model.encoder)
-            del self.teacher.model.encoder
-
-    def pre_init(self, hparams):
-        self.output_dir = Path(hparams.output_dir)
-        self.output_dir.mkdir(exist_ok=True)
-        teacher = AutoModelForSeq2SeqLM.from_pretrained(hparams.teacher).eval()
-        student_updates = {
-            "decoder_layers": hparams.student_decoder_layers,
-            "encoder_layers": hparams.student_encoder_layers,
-        }
-        if hparams.length_penalty != -1:
-            student_updates["length_penalty"] = hparams.length_penalty
-        e_layers_to_copy: List = get_layers_to_copy(student_updates["encoder_layers"], teacher.config.encoder_layers)
-        hparams.e_layer_to_copy = e_layers_to_copy
-
-        d_layers_to_copy: List = get_layers_to_copy(student_updates["decoder_layers"], teacher.config.decoder_layers)
-
-        if hparams.supervise_forward:
-            hparams.d_matches = get_layers_to_supervise(
-                student_updates["decoder_layers"], teacher.config.decoder_layers
-            )
-        else:
-            hparams.d_matches = d_layers_to_copy
-        hparams.d_layer_to_copy = d_layers_to_copy
-
-        kw = teacher.config.to_diff_dict()
-        kw.update(student_updates)
-        # Copy weights
-        student_cfg = teacher.config_class(**kw)
-        student = type(teacher)(student_cfg)
-        student, _ = init_student(student, teacher)
-        save_dir = self.output_dir.joinpath("student")
-        self.copy_to_student(d_layers_to_copy, e_layers_to_copy, hparams, student, teacher)
-        student.save_pretrained(save_dir)
-        hparams.model_name_or_path = str(save_dir)
-        return student, student_cfg, teacher
-
-    def copy_to_student(self, d_layers_to_copy, e_layers_to_copy, hparams, student, teacher):
-        if teacher.config.model_type == "t5":
-            return self.copy_t5_to_student(d_layers_to_copy, e_layers_to_copy, hparams, student, teacher)
-        self.different_encoder: bool = hparams.student_encoder_layers != teacher.config.encoder_layers
-        self.different_decoder = hparams.student_decoder_layers != teacher.config.decoder_layers
-        if self.different_decoder:
-            copy_layers(teacher.model.decoder.layers, student.model.decoder.layers, d_layers_to_copy)
-        if self.different_encoder:
-            copy_layers(teacher.model.encoder.layers, student.model.encoder.layers, e_layers_to_copy)
-
-    def copy_t5_to_student(self, d_layers_to_copy, e_layers_to_copy, hparams, student, teacher):
-        self.different_encoder: bool = hparams.student_encoder_layers != teacher.config.num_layers
-        self.different_decoder = hparams.student_decoder_layers != teacher.config.num_layers
-        if self.different_decoder:
-            copy_layers(teacher.decoder.block, student.decoder.block, d_layers_to_copy)
-        if self.different_encoder:
-            copy_layers(teacher.encoder.block, student.encoder.block, e_layers_to_copy)
-
     def calc_mse_loss(self, teacher_outputs: torch.Tensor, student_outputs: torch.Tensor, mask) -> torch.FloatTensor:
+        """Supervise MSE(teacher.encoder_outputs, student.encoder_outputs)."""
+        # raise NotImplementedError()
         if mask is not None:
             # mask has False at padding_idx
             sel_mask = mask[:, :, None].expand_as(student_outputs).bool()
@@ -126,20 +97,15 @@ class BartSummarizationDistiller(SummarizationModule):
         return F.mse_loss(s_logits_slct, t_logits_slct)
 
     def calc_ce_loss(self, mask, s_logits, t_logits):
-        if mask is not None:
-            # mask has False at padding_idx
-            sel_mask = mask[:, :, None].expand_as(s_logits)
-            s_logits_slct = torch.masked_select(
-                s_logits, sel_mask
-            )  # (bs * seq_length * voc_size) modulo the 1s in mask
-            t_logits_slct = torch.masked_select(
-                t_logits, sel_mask
-            )  # (bs * seq_length * voc_size) modulo the 1s in mask
-        else:
-            t_logits_slct = t_logits
-            s_logits_slct = s_logits  # (bs * seq_length * voc_size) modulo the 1s in mask
-        s_logits_slct = s_logits_slct.view(-1, s_logits.size(-1))  # (bs * seq_length, voc_size) modulo the 1s in mask
-        t_logits_slct = t_logits_slct.view(-1, s_logits.size(-1))  # (bs * seq_length, voc_size) modulo the 1s in mask
+        """Copy pasted from distillbert (transformers/examples/distillation/)"""
+
+        # mask has False at padding_idx
+        sel_mask = mask[:, :, None].expand_as(s_logits)
+        vocab_size = s_logits.size(-1)
+        s_logits_slct = torch.masked_select(s_logits, sel_mask)  # (bs * seq_length * voc_size) modulo the 1s in mask
+        t_logits_slct = torch.masked_select(t_logits, sel_mask)  # (bs * seq_length * voc_size) modulo the 1s in mask
+        s_logits_slct = s_logits_slct.view(-1, vocab_size)  # (bs * seq_length, voc_size) modulo the 1s in mask
+        t_logits_slct = t_logits_slct.view(-1, vocab_size)  # (bs * seq_length, voc_size) modulo the 1s in mask
         assert t_logits_slct.size() == s_logits_slct.size()
         loss_ce = (
             self.ce_loss_fct(
@@ -148,7 +114,7 @@ class BartSummarizationDistiller(SummarizationModule):
             )
             * (self.temperature) ** 2
         )
-        return loss_ce, s_logits_slct, t_logits_slct
+        return loss_ce
 
     @staticmethod
     def add_model_specific_args(parser, root_dir):
@@ -157,10 +123,14 @@ class BartSummarizationDistiller(SummarizationModule):
         return parser
 
     def _step(self, batch):
-        # assert is_frozen(self.teacher)
+        # assert is_frozen(self.teacher) copied_decoder_layers
         pad_token_id = self.tokenizer.pad_token_id
-        input_ids, src_mask, tgt_ids = batch["input_ids"], batch["attention_mask"], batch["labels"]
-        decoder_input_ids = shift_tokens_right(tgt_ids, pad_token_id)
+        input_ids, src_mask, labels = batch["input_ids"], batch["attention_mask"], batch["labels"]
+        if isinstance(self.model, T5ForConditionalGeneration):
+            decoder_input_ids = self.model._shift_right(labels)
+        else:
+            decoder_input_ids = shift_tokens_right(labels, pad_token_id)
+
         # noinspection PyCallingNonCallable
         lm_logits, dec_hidden, enc_outputs, enc_hidden_state = self(
             input_ids,
@@ -169,62 +139,66 @@ class BartSummarizationDistiller(SummarizationModule):
             output_hidden_states=True,
             output_attentions=False,
             use_cache=False,
-        )  # TODO(@sshleifer): return_dict=True cleanup
+        )
 
         # Same cross entropy vs. label smoothing logic as finetune.py
         assert lm_logits.shape[-1] == self.model.config.vocab_size
         if self.hparams.label_smoothing == 0:
             # Same behavior as modeling_bart.py, besides ignoring pad_token_id
             loss_fct = torch.nn.CrossEntropyLoss(ignore_index=pad_token_id)
-            student_lm_loss = loss_fct(lm_logits.view(-1, lm_logits.shape[-1]), tgt_ids.view(-1))
+            student_lm_loss = loss_fct(lm_logits.view(-1, lm_logits.shape[-1]), labels.view(-1))
         else:
             lprobs = torch.nn.functional.log_softmax(lm_logits, dim=-1)
             student_lm_loss, _ = label_smoothed_nll_loss(
-                lprobs, tgt_ids, self.hparams.label_smoothing, ignore_index=pad_token_id
+                lprobs, labels, self.hparams.label_smoothing, ignore_index=pad_token_id
             )
 
         def zero_tensor():
             return torch.tensor(0.0).type_as(student_lm_loss)
 
-        loss_encoder, hid_loss_enc, hid_loss_dec = zero_tensor(), zero_tensor(), zero_tensor()
-        if self.different_encoder:
+        hid_loss_enc, hid_loss_dec = zero_tensor(), zero_tensor()
+        if self.different_encoder:  # compute encoder hidden state loss
             with torch.no_grad():
-                teacher_enc_outputs, teacher_enc_hid, _ = self.teacher.model.encoder(
-                    input_ids, attention_mask=src_mask, output_hidden_states=True
-                )
-            if self.hparams.alpha_encoder_loss > 0:
-                loss_encoder = self.calc_mse_loss(enc_outputs, teacher_enc_outputs, src_mask)
+                teacher_enc_hid = self.teacher.get_encoder()(
+                    input_ids, attention_mask=src_mask, output_hidden_states=True, return_dict=True
+                ).hidden_states
 
             hid_loss_enc = self.calc_hidden_loss(
-                src_mask, enc_hidden_state, teacher_enc_hid, self.hparams.e_layer_to_copy
+                src_mask,
+                enc_hidden_state,
+                teacher_enc_hid,
+                self.e_matches,
+                normalize_hidden=self.hparams.normalize_hidden,
             )
 
-        teacher_enc_outputs = (enc_outputs,)
-        assert isinstance(teacher_enc_outputs, tuple), type(teacher_enc_outputs)
-
         with torch.no_grad():
-            tloss, tlogits, tdec_hidden, _ = self.teacher(
+            outputs = self.teacher(
                 input_ids,
                 attention_mask=src_mask,
-                encoder_outputs=teacher_enc_outputs,
+                encoder_outputs=(enc_outputs,),
                 decoder_input_ids=decoder_input_ids,
-                lm_labels=tgt_ids,
+                lm_labels=labels,
                 output_hidden_states=True,
+                return_dict=True,
             )
+            tlogits, tdec_hidden = outputs.logits, outputs.decoder_hidden_states
         dec_mask = decoder_input_ids.ne(pad_token_id)
-        loss_ce, s_logits_slct, t_logits_slct = self.calc_ce_loss(dec_mask, lm_logits, tlogits)
-        if self.alpha_hid > 0:
-            hid_loss_dec = self.calc_hidden_loss(dec_mask, dec_hidden, tdec_hidden, self.hparams.d_matches)
+        loss_ce = self.calc_ce_loss(dec_mask, lm_logits, tlogits)
+        if self.alpha_hid > 0:  # Intermediate supervision of decoder hidden states
+            hid_loss_dec = self.calc_hidden_loss(
+                dec_mask, dec_hidden, tdec_hidden, self.d_matches, normalize_hidden=self.hparams.normalize_hidden
+            )
 
         blended_loss = (
             self.alpha_ce * loss_ce
             + self.alpha_mlm * student_lm_loss
-            + self.hparams.alpha_encoder_loss * loss_encoder
             + self.hparams.alpha_hid * (hid_loss_enc + hid_loss_dec)
         )
-        return blended_loss, loss_ce, student_lm_loss, loss_encoder, hid_loss_enc, hid_loss_dec
+        return blended_loss, loss_ce, student_lm_loss, hid_loss_enc, hid_loss_dec
 
-    def calc_hidden_loss(self, attention_mask, hidden_states, hidden_states_T, matches):
+    @staticmethod
+    def calc_hidden_loss(attention_mask, hidden_states, hidden_states_T, matches, normalize_hidden):
+        """MSE(student_hid, teacher_hid[matches]). Called "Intermediate supervision" in paper. Inspired by TinyBERT."""
         msg = "expected list or tuple for hidden_states, got tensor of shape: "
         assert not isinstance(hidden_states, torch.Tensor), f"{msg}{hidden_states.shape}"
         assert not isinstance(hidden_states_T, torch.Tensor), f"{msg}{hidden_states_T.shape}"
@@ -232,7 +206,7 @@ class BartSummarizationDistiller(SummarizationModule):
         valid_count = mask.sum() * hidden_states[0].size(-1)
         student_states = torch.stack([hidden_states[i] for i in range(len(matches))])
         teacher_states = torch.stack([hidden_states_T[j] for j in matches])
-        if self.hparams.normalize_hidden:
+        if normalize_hidden:
             student_states = F.layer_norm(student_states, student_states.shape[1:])
             teacher_states = F.layer_norm(teacher_states, teacher_states.shape[1:])
         mse = F.mse_loss(student_states, teacher_states, reduction="none")
@@ -244,7 +218,6 @@ def add_distill_args(parser):
     parser.add_argument("--teacher", type=str)
     parser.add_argument("--alpha_ce", default=0.8, type=float)
     parser.add_argument("--alpha_mlm", default=0.2, type=float)
-    parser.add_argument("--alpha_encoder_loss", default=0.0, type=float)
     parser.add_argument("--alpha_hid", default=0.0, type=float, required=False)
     parser.add_argument("--student_decoder_layers", default=12, type=int, required=False)
     parser.add_argument("--student_encoder_layers", default=12, type=int, required=False)
@@ -280,130 +253,9 @@ class BartTranslationDistiller(BartSummarizationDistiller):
         return parser
 
 
-class T5SummarizationDistiller(BartSummarizationDistiller):
-    def pre_init(self, hparams):
-        raise NotImplementedError("T5 Distillation does not work yet")
-        self.output_dir = Path(hparams.output_dir)
-        self.output_dir.mkdir(exist_ok=True)
-        teacher = T5ForConditionalGeneration.from_pretrained(hparams.teacher)
-        n_layer = hparams.student_decoder_layers
-        assert n_layer == hparams.student_encoder_layers  # TODO(SS): relax this constraint so that we can do 12-6.
-        d_layers_to_copy = get_layers_to_copy(n_layer, len(teacher.decoder.block))
-        e_layers_to_copy: List = get_layers_to_copy(n_layer, len(teacher.encoder.block))
-        student_updates = {"num_layers": n_layer}
-        hparams.d_layer_to_copy = d_layers_to_copy
-        hparams.e_layer_to_copy = e_layers_to_copy
-        kw = teacher.config.to_diff_dict()
-
-        kw.update(student_updates)
-        # Copy weights
-        student_cfg = T5Config(**kw)
-        student = T5ForConditionalGeneration(student_cfg)
-        student, _ = init_student(student, teacher)
-        self.copy_to_student(d_layers_to_copy, e_layers_to_copy, hparams, student, teacher)
-        Path(hparams.output_dir).mkdir(exist_ok=True)
-        task_specific_params = student.config.task_specific_params
-        if task_specific_params is not None:
-            student.config.update(task_specific_params.get("summarization", {}))  # TODO: dont hardcode
-        save_dir = self.output_dir.joinpath("student")
-        save_dir.mkdir(exist_ok=True)
-
-        student.save_pretrained(save_dir)
-        hparams.model_name_or_path = str(save_dir)
-        return student, student_cfg, teacher
-
-    def freeze_embeds(self):
-        freeze_params(self.model.shared)
-        for d in [self.model.encoder, self.model.decoder]:
-            freeze_params(d.embed_tokens)
-
-    def sanity_check_gradients(self):
-        """T5"""
-        assert_all_frozen(self.teacher)
-        assert_all_frozen(self.model.decoder.embed_tokens)
-        assert_all_frozen(self.model.encoder.embed_tokens)
-        if self.different_encoder:
-            assert any_requires_grad(self.model.encoder)
-        else:
-            freeze_params(self.model.encoder)
-            del self.teacher.model.encoder
-        if self.different_decoder:
-            assert any_requires_grad(self.model.decoder)
-        else:
-            freeze_params(self.model.decoder)  # TODO(SS): very suspicious
-
-    def _step(self, batch):
-        pad_token_id = self.tokenizer.pad_token_id
-        source_ids, source_mask, y = batch["input_ids"], batch["attention_mask"], batch["decoder_input_ids"]
-        decoder_input_ids = y[:, :-1].contiguous()
-        labels = y[:, 1:].clone()
-        labels[y[:, 1:] == pad_token_id] = -100
-        # noinspection PyCallingNonCallable
-        dec_mask = decoder_input_ids.ne(pad_token_id)
-
-        sloss, slogits, dec_hidden, enc_outputs, enc_hidden_state = self(
-            source_ids,
-            attention_mask=source_mask,
-            decoder_input_ids=decoder_input_ids,
-            labels=labels,
-            output_hidden_states=True,
-            output_attentions=False,
-            use_cache=False,
-        )
-
-        def zero_tensor():
-            return torch.tensor(0.0).type_as(sloss)
-
-        loss_encoder, hid_loss_enc, hid_loss_dec = zero_tensor(), zero_tensor(), zero_tensor()
-        if self.different_encoder:
-            with torch.no_grad():
-                teacher_enc_outputs, teacher_enc_hid = self.teacher.encoder(
-                    source_ids,
-                    attention_mask=source_mask,
-                    output_hidden_states=True,
-                    use_cache=False,
-                )
-            if self.hparams.alpha_encoder_loss > 0:
-                loss_encoder = self.calc_mse_loss(enc_outputs, teacher_enc_outputs, source_mask)
-
-            hid_loss_enc = self.calc_hidden_loss(
-                source_mask, enc_hidden_state, teacher_enc_hid, self.hparams.e_layer_to_copy
-            )
-
-        teacher_enc_outputs = (enc_outputs,)
-        assert isinstance(teacher_enc_outputs, tuple), type(teacher_enc_outputs)
-
-        with torch.no_grad():
-            tloss, tlogits, tdec_hidden, _ = self.teacher(
-                source_ids,
-                attention_mask=source_mask,
-                encoder_outputs=teacher_enc_outputs,
-                decoder_input_ids=decoder_input_ids,
-                labels=labels,
-                output_hidden_states=True,
-                use_cache=False,
-            )
-
-        loss_ce, s_logits_slct, t_logits_slct = self.calc_ce_loss(dec_mask, slogits, tlogits)
-        if self.alpha_hid > 0:
-            hid_loss_dec = self.calc_hidden_loss(dec_mask, dec_hidden, tdec_hidden, self.hparams.d_matches)
-
-        blended_loss = (
-            self.alpha_ce * loss_ce
-            + self.alpha_mlm * sloss
-            + self.hparams.alpha_encoder_loss * loss_encoder
-            + self.hparams.alpha_hid * (hid_loss_enc + hid_loss_dec)
-        )
-        return blended_loss, loss_ce, sloss, loss_encoder, hid_loss_enc, hid_loss_dec
-
-
 def create_module(args):
-    t5 = "t5" in args.model_name_or_path
     if args.no_teacher:
         module_cls = TranslationModule if "translation" in args.task else SummarizationModule
-    elif t5:  # DISTILL T5 WITH TEACHER FOR SUMMARIZATION
-        assert "translation" not in args.task, "t5 translation distillation not supported"
-        module_cls = T5SummarizationDistiller
     else:  # DISTILL WITH TEACHER
         module_cls = BartTranslationDistiller if "translation" in args.task else BartSummarizationDistiller
     args.setup_cls: str = module_cls.__name__
@@ -436,56 +288,6 @@ def evaluate_checkpoint(ckpt_path: Path, dest_dir=None):
     trainer.test(model)
 
 
-LAYERS_TO_COPY = {
-    # maps  num layers in student -> which teacher layers to copy.
-    # 12: bart, 16: pegasus, 6: marian/Helsinki-NLP
-    12: {
-        1: [0],
-        2: [0, 6],
-        3: [0, 6, 11],
-        4: [0, 4, 8, 11],
-        6: [0, 2, 4, 7, 9, 11],
-        9: [0, 1, 2, 4, 5, 7, 9, 10, 11],
-        12: list(range(12)),
-    },
-    16: {  # maps  num layers in student -> which teacher layers to copy
-        1: [0],
-        2: [0, 8],
-        3: [0, 8, 15],
-        4: [0, 5, 10, 15],
-        6: [0, 3, 6, 9, 12, 15],
-        8: [0, 2, 4, 6, 8, 10, 12, 15],
-        9: [0, 1, 3, 5, 7, 9, 11, 13, 15],
-        12: [0, 1, 2, 3, 4, 5, 6, 7, 9, 11, 13, 15],
-        16: list(range(16)),
-    },
-    6: {1: [0], 2: [0, 5], 3: [0, 2, 5], 4: [0, 1, 3, 5], 6: list(range(6))},
-}
-LAYERS_TO_SUPERVISE = {
-    12: {1: [11], 2: [5, 11], 3: [3, 7, 11], 6: [1, 3, 5, 8, 10, 11]},
-    16: {1: [15], 4: [4, 9, 12, 15], 8: [1, 3, 5, 7, 9, 11, 13, 15]},
-    6: {1: [5], 2: [3, 5], 3: [1, 4, 5], 4: [1, 2, 4, 5]},
-    2: {1: [1], 2: [0, 1]},
-}
-
-
-def get_layers_to_supervise(n_student, n_teacher):
-    return LAYERS_TO_SUPERVISE[n_teacher][n_student]
-
-
-def get_layers_to_copy(n_student, n_teacher):
-    try:
-        val = LAYERS_TO_COPY[n_teacher][n_student]
-        assert len(LAYERS_TO_SUPERVISE[n_teacher][n_student]) == len(val) == n_student
-        return val
-    except KeyError:
-        if n_student != n_teacher:
-            warnings.warn(
-                f"no hardcoded layers to copy for teacher {n_teacher} -> student {n_student}, defaulting to first {n_student}"
-            )
-        return list(range(n_student))
-
-
 def distill_main(args):
     Path(args.output_dir).mkdir(exist_ok=True)
     if len(os.listdir(args.output_dir)) > 3 and args.do_train:

examples/seq2seq/download_wmt.py

@@ -1,3 +1,5 @@
+#!/usr/bin/env python
+
 from pathlib import Path
 
 import fire

examples/seq2seq/finetune.py

@@ -1,7 +1,10 @@
+#!/usr/bin/env python
+
 import argparse
 import glob
 import logging
 import os
+import sys
 import time
 from collections import defaultdict
 from pathlib import Path
@@ -13,7 +16,6 @@ import torch
 from torch.utils.data import DataLoader
 
 from callbacks import Seq2SeqLoggingCallback, get_checkpoint_callback, get_early_stopping_callback
-from lightning_base import BaseTransformer, add_generic_args, generic_train
 from transformers import MBartTokenizer, T5ForConditionalGeneration
 from transformers.modeling_bart import shift_tokens_right
 from utils import (
@@ -24,16 +26,23 @@ from utils import (
     calculate_bleu,
     calculate_rouge,
     flatten_list,
+    freeze_embeds,
     freeze_params,
     get_git_info,
     label_smoothed_nll_loss,
     lmap,
     pickle_save,
     save_git_info,
+    save_json,
     use_task_specific_params,
 )
 
 
+# need the parent dir module
+sys.path.insert(2, str(Path(__file__).resolve().parents[1]))
+from lightning_base import BaseTransformer, add_generic_args, generic_train  # noqa
+
+
 logger = logging.getLogger(__name__)
 
 
@@ -83,7 +92,7 @@ class SummarizationModule(BaseTransformer):
         assert self.target_lens["train"] <= self.target_lens["val"], f"target_lens: {self.target_lens}"
         assert self.target_lens["train"] <= self.target_lens["test"], f"target_lens: {self.target_lens}"
         if self.hparams.freeze_embeds:
-            self.freeze_embeds()
+            freeze_embeds(self.model)
         if self.hparams.freeze_encoder:
             freeze_params(self.model.get_encoder())
             assert_all_frozen(self.model.get_encoder())
@@ -97,29 +106,24 @@ class SummarizationModule(BaseTransformer):
         self.dataset_class = (
             Seq2SeqDataset if hasattr(self.tokenizer, "prepare_seq2seq_batch") else LegacySeq2SeqDataset
         )
+        self.already_saved_batch = False
         self.eval_beams = self.model.config.num_beams if self.hparams.eval_beams is None else self.hparams.eval_beams
-        assert self.eval_beams >= 1, f"got self.eval_beams={self.eval_beams}. Need an integer > 1"
         if self.hparams.eval_max_gen_length is not None:
             self.eval_max_length = self.hparams.eval_max_gen_length
         else:
             self.eval_max_length = self.model.config.max_length
         self.val_metric = self.default_val_metric if self.hparams.val_metric is None else self.hparams.val_metric
 
-    def freeze_embeds(self):
-        """Freeze token embeddings and positional embeddings for bart, just token embeddings for t5."""
-        if self.model_type == "t5":
-            freeze_params(self.model.shared)
-            for d in [self.model.encoder, self.model.decoder]:
-                freeze_params(d.embed_tokens)
-        elif self.model_type == "fsmt":
-            for d in [self.model.model.encoder, self.model.model.decoder]:
-                freeze_params(d.embed_positions)
-                freeze_params(d.embed_tokens)
-        else:
-            freeze_params(self.model.model.shared)
-            for d in [self.model.model.encoder, self.model.model.decoder]:
-                freeze_params(d.embed_positions)
-                freeze_params(d.embed_tokens)
+    def save_readable_batch(self, batch: Dict[str, torch.Tensor]) -> Dict[str, List[str]]:
+        """A debugging utility"""
+        readable_batch = {
+            k: self.tokenizer.batch_decode(v.tolist()) if "mask" not in k else v.shape for k, v in batch.items()
+        }
+        save_json(readable_batch, Path(self.output_dir) / "text_batch.json")
+        save_json({k: v.tolist() for k, v in batch.items()}, Path(self.output_dir) / "tok_batch.json")
+
+        self.already_saved_batch = True
+        return readable_batch
 
     def forward(self, input_ids, **kwargs):
         return self.model(input_ids, **kwargs)
@@ -138,6 +142,9 @@ class SummarizationModule(BaseTransformer):
             decoder_input_ids = self.model._shift_right(tgt_ids)
         else:
             decoder_input_ids = shift_tokens_right(tgt_ids, pad_token_id)
+        if not self.already_saved_batch:  # This would be slightly better if it only happened on rank zero
+            batch["decoder_input_ids"] = decoder_input_ids
+            self.save_readable_batch(batch)
 
         outputs = self(src_ids, attention_mask=src_mask, decoder_input_ids=decoder_input_ids, use_cache=False)
         lm_logits = outputs[0]

examples/seq2seq/finetune.sh

@@ -1,6 +1,3 @@
-# Add parent directory to python path to access lightning_base.py
-export PYTHONPATH="../":"${PYTHONPATH}"
-
 # the proper usage is documented in the README, you need to specify data_dir, output_dir and model_name_or_path
 # run ./finetune.sh --help to see all the possible options
 python finetune.py \

examples/seq2seq/finetune_bart_tiny.sh

@@ -1,7 +1,7 @@
 # Script for verifying that run_bart_sum can be invoked from its directory
 
 # Get tiny dataset with cnn_dm format (4 examples for train, val, test)
-wget https://s3.amazonaws.com/datasets.huggingface.co/summarization/cnn_tiny.tgz
+wget https://cdn-datasets.huggingface.co/summarization/cnn_tiny.tgz
 tar -xzvf cnn_tiny.tgz
 rm cnn_tiny.tgz
 

examples/seq2seq/finetune_trainer.py

@@ -0,0 +1,349 @@
+import logging
+import os
+import sys
+from dataclasses import dataclass, field
+from typing import Optional
+
+from seq2seq_trainer import Seq2SeqTrainer, arg_to_scheduler_choices
+from transformers import (
+    AutoConfig,
+    AutoModelForSeq2SeqLM,
+    AutoTokenizer,
+    HfArgumentParser,
+    MBartTokenizer,
+    TrainingArguments,
+    set_seed,
+)
+from transformers.trainer_utils import EvaluationStrategy
+from utils import (
+    LegacySeq2SeqDataset,
+    Seq2SeqDataCollator,
+    Seq2SeqDataset,
+    assert_all_frozen,
+    build_compute_metrics_fn,
+    freeze_embeds,
+    freeze_params,
+    lmap,
+    save_json,
+    use_task_specific_params,
+    write_txt_file,
+)
+
+
+logger = logging.getLogger(__name__)
+
+
+@dataclass
+class Seq2SeqTrainingArguments(TrainingArguments):
+    """
+    Parameters:
+        label_smoothing (:obj:`float`, `optional`, defaults to 0):
+            The label smoothing epsilon to apply (if not zero).
+        sortish_sampler (:obj:`bool`, `optional`, defaults to :obj:`False`):
+            Whether to SortishSamler or not. It sorts the inputs according to lenghts in-order to minimizing the padding size.
+        predict_with_generate (:obj:`bool`, `optional`, defaults to :obj:`False`):
+            Whether to use generate to calculate generative metrics (ROUGE, BLEU).
+    """
+
+    label_smoothing: Optional[float] = field(
+        default=0.0, metadata={"help": "The label smoothing epsilon to apply (if not zero)."}
+    )
+    sortish_sampler: bool = field(default=False, metadata={"help": "Whether to SortishSamler or not."})
+    predict_with_generate: bool = field(
+        default=False, metadata={"help": "Whether to use generate to calculate generative metrics (ROUGE, BLEU)."}
+    )
+    adafactor: bool = field(default=False, metadata={"help": "whether to use adafactor"})
+    encoder_layerdrop: Optional[float] = field(
+        default=None, metadata={"help": "Encoder layer dropout probability. Goes into model.config."}
+    )
+    decoder_layerdrop: Optional[float] = field(
+        default=None, metadata={"help": "Decoder layer dropout probability. Goes into model.config."}
+    )
+    dropout: Optional[float] = field(default=None, metadata={"help": "Dropout probability. Goes into model.config."})
+    attention_dropout: Optional[float] = field(
+        default=None, metadata={"help": "Attention dropout probability. Goes into model.config."}
+    )
+    lr_scheduler: Optional[str] = field(
+        default="linear", metadata={"help": f"Which lr scheduler to use. Selected in {arg_to_scheduler_choices}"}
+    )
+
+
+@dataclass
+class ModelArguments:
+    """
+    Arguments pertaining to which model/config/tokenizer we are going to fine-tune from.
+    """
+
+    model_name_or_path: str = field(
+        metadata={"help": "Path to pretrained model or model identifier from huggingface.co/models"}
+    )
+    config_name: Optional[str] = field(
+        default=None, metadata={"help": "Pretrained config name or path if not the same as model_name"}
+    )
+    tokenizer_name: Optional[str] = field(
+        default=None, metadata={"help": "Pretrained tokenizer name or path if not the same as model_name"}
+    )
+    cache_dir: Optional[str] = field(
+        default=None, metadata={"help": "Where do you want to store the pretrained models downloaded from s3"}
+    )
+    freeze_encoder: bool = field(default=False, metadata={"help": "Whether tp freeze the encoder."})
+    freeze_embeds: bool = field(default=False, metadata={"help": "Whether  to freeze the embeddings."})
+
+
+@dataclass
+class DataTrainingArguments:
+    """
+    Arguments pertaining to what data we are going to input our model for training and eval.
+    """
+
+    data_dir: str = field(
+        metadata={"help": "The input data dir. Should contain the .tsv files (or other data files) for the task."}
+    )
+    task: Optional[str] = field(
+        default="summarization",
+        metadata={"help": "Task name, summarization (or summarization_{dataset} for pegasus) or translation"},
+    )
+    max_source_length: Optional[int] = field(
+        default=1024,
+        metadata={
+            "help": "The maximum total input sequence length after tokenization. Sequences longer "
+            "than this will be truncated, sequences shorter will be padded."
+        },
+    )
+    max_target_length: Optional[int] = field(
+        default=128,
+        metadata={
+            "help": "The maximum total sequence length for target text after tokenization. Sequences longer "
+            "than this will be truncated, sequences shorter will be padded."
+        },
+    )
+    val_max_target_length: Optional[int] = field(
+        default=142,
+        metadata={
+            "help": "The maximum total sequence length for validation target text after tokenization. Sequences longer "
+            "than this will be truncated, sequences shorter will be padded."
+        },
+    )
+    test_max_target_length: Optional[int] = field(
+        default=142,
+        metadata={
+            "help": "The maximum total sequence length for test target text after tokenization. Sequences longer "
+            "than this will be truncated, sequences shorter will be padded."
+        },
+    )
+    n_train: Optional[int] = field(default=-1, metadata={"help": "# training examples. -1 means use all."})
+    n_val: Optional[int] = field(default=-1, metadata={"help": "# validation examples. -1 means use all."})
+    n_test: Optional[int] = field(default=-1, metadata={"help": "# test examples. -1 means use all."})
+    src_lang: Optional[str] = field(default=None, metadata={"help": "Source language id for translation."})
+    tgt_lang: Optional[str] = field(default=None, metadata={"help": "Target language id for translation."})
+    eval_beams: Optional[int] = field(default=None, metadata={"help": "# num_beams to use for evaluation."})
+
+
+def main():
+    # See all possible arguments in src/transformers/training_args.py
+    # or by passing the --help flag to this script.
+    # We now keep distinct sets of args, for a cleaner separation of concerns.
+
+    parser = HfArgumentParser((ModelArguments, DataTrainingArguments, Seq2SeqTrainingArguments))
+
+    if len(sys.argv) == 2 and sys.argv[1].endswith(".json"):
+        # If we pass only one argument to the script and it's the path to a json file,
+        # let's parse it to get our arguments.
+        model_args, data_args, training_args = parser.parse_json_file(json_file=os.path.abspath(sys.argv[1]))
+    else:
+        model_args, data_args, training_args = parser.parse_args_into_dataclasses()
+
+    if (
+        os.path.exists(training_args.output_dir)
+        and os.listdir(training_args.output_dir)
+        and training_args.do_train
+        and not training_args.overwrite_output_dir
+    ):
+        raise ValueError(
+            f"Output directory ({training_args.output_dir}) already exists and is not empty. Use --overwrite_output_dir to overcome."
+        )
+
+    # Setup logging
+    logging.basicConfig(
+        format="%(asctime)s - %(levelname)s - %(name)s -   %(message)s",
+        datefmt="%m/%d/%Y %H:%M:%S",
+        level=logging.INFO if training_args.local_rank in [-1, 0] else logging.WARN,
+    )
+    logger.warning(
+        "Process rank: %s, device: %s, n_gpu: %s, distributed training: %s, 16-bits training: %s",
+        training_args.local_rank,
+        training_args.device,
+        training_args.n_gpu,
+        bool(training_args.local_rank != -1),
+        training_args.fp16,
+    )
+    logger.info("Training/evaluation parameters %s", training_args)
+
+    # Set seed
+    set_seed(training_args.seed)
+
+    # Load pretrained model and tokenizer
+    #
+    # Distributed training:
+    # The .from_pretrained methods guarantee that only one local process can concurrently
+    # download model & vocab.
+
+    config = AutoConfig.from_pretrained(
+        model_args.config_name if model_args.config_name else model_args.model_name_or_path,
+        cache_dir=model_args.cache_dir,
+    )
+
+    extra_model_params = ("encoder_layerdrop", "decoder_layerdrop", "dropout", "attention_dropout")
+    for p in extra_model_params:
+        if getattr(training_args, p, None):
+            assert hasattr(config, p), f"({config.__class__.__name__}) doesn't have a `{p}` attribute"
+            setattr(config, p, getattr(training_args, p))
+
+    tokenizer = AutoTokenizer.from_pretrained(
+        model_args.tokenizer_name if model_args.tokenizer_name else model_args.model_name_or_path,
+        cache_dir=model_args.cache_dir,
+    )
+    model = AutoModelForSeq2SeqLM.from_pretrained(
+        model_args.model_name_or_path,
+        from_tf=".ckpt" in model_args.model_name_or_path,
+        config=config,
+        cache_dir=model_args.cache_dir,
+    )
+
+    # use task specific params
+    use_task_specific_params(model, data_args.task)
+
+    # set num_beams for evaluation
+    if data_args.eval_beams is None:
+        data_args.eval_beams = model.config.num_beams
+
+    # set decoder_start_token_id for MBart
+    if model.config.decoder_start_token_id is None and isinstance(tokenizer, MBartTokenizer):
+        assert (
+            data_args.tgt_lang is not None and data_args.src_lang is not None
+        ), "mBart requires --tgt_lang and --src_lang"
+        model.config.decoder_start_token_id = tokenizer.lang_code_to_id[data_args.tgt_lang]
+
+    if model_args.freeze_embeds:
+        freeze_embeds(model)
+    if model_args.freeze_encoder:
+        freeze_params(model.get_encoder())
+        assert_all_frozen(model.get_encoder())
+
+    dataset_class = Seq2SeqDataset if hasattr(tokenizer, "prepare_seq2seq_batch") else LegacySeq2SeqDataset
+
+    # Get datasets
+    train_dataset = (
+        dataset_class(
+            tokenizer,
+            type_path="train",
+            data_dir=data_args.data_dir,
+            n_obs=data_args.n_train,
+            max_target_length=data_args.max_target_length,
+            max_source_length=data_args.max_source_length,
+            prefix=model.config.prefix or "",
+        )
+        if training_args.do_train
+        else None
+    )
+    eval_dataset = (
+        dataset_class(
+            tokenizer,
+            type_path="val",
+            data_dir=data_args.data_dir,
+            n_obs=data_args.n_val,
+            max_target_length=data_args.val_max_target_length,
+            max_source_length=data_args.max_source_length,
+            prefix=model.config.prefix or "",
+        )
+        if training_args.do_eval or training_args.evaluation_strategy != EvaluationStrategy.NO
+        else None
+    )
+    test_dataset = (
+        dataset_class(
+            tokenizer,
+            type_path="test",
+            data_dir=data_args.data_dir,
+            n_obs=data_args.n_test,
+            max_target_length=data_args.test_max_target_length,
+            max_source_length=data_args.max_source_length,
+            prefix=model.config.prefix or "",
+        )
+        if training_args.do_predict
+        else None
+    )
+
+    # Initialize our Trainer
+    compute_metrics_fn = (
+        build_compute_metrics_fn(data_args.task, tokenizer) if training_args.predict_with_generate else None
+    )
+    trainer = Seq2SeqTrainer(
+        model=model,
+        config=config,
+        args=training_args,
+        train_dataset=train_dataset,
+        eval_dataset=eval_dataset,
+        data_collator=Seq2SeqDataCollator(tokenizer, data_args, training_args.tpu_num_cores),
+        compute_metrics=compute_metrics_fn,
+        data_args=data_args,
+    )
+
+    # Training
+    if training_args.do_train:
+        trainer.train(
+            model_path=model_args.model_name_or_path if os.path.isdir(model_args.model_name_or_path) else None
+        )
+        trainer.save_model()
+        # For convenience, we also re-save the tokenizer to the same directory,
+        # so that you can share your model easily on huggingface.co/models =)
+        if trainer.is_world_process_zero():
+            trainer.state.save_to_json(os.path.join(training_args.output_dir, "trainer_state.json"))
+            tokenizer.save_pretrained(training_args.output_dir)
+
+    # Evaluation
+    eval_results = {}
+    if training_args.do_eval:
+        logger.info("*** Evaluate ***")
+
+        result = trainer.evaluate()
+
+        if trainer.is_world_process_zero():
+            logger.info("***** Eval results *****")
+            for key, value in result.items():
+                logger.info("  %s = %s", key, value)
+            save_json(result, os.path.join(training_args.output_dir, "eval_results.json"))
+            eval_results.update(result)
+
+    if training_args.do_predict:
+        logging.info("*** Test ***")
+
+        test_output = trainer.predict(test_dataset=test_dataset)
+        test_metrics = {k.replace("eval", "test"): v for k, v in test_output.metrics.items()}
+
+        if trainer.is_world_process_zero():
+            logger.info("***** Test results *****")
+            for key, value in test_metrics.items():
+                logger.info("  %s = %s", key, value)
+
+            save_json(test_metrics, os.path.join(training_args.output_dir, "test_results.json"))
+            eval_results.update(test_metrics)
+
+            if training_args.predict_with_generate:
+                test_preds = tokenizer.batch_decode(
+                    test_output.predictions, skip_special_tokens=True, clean_up_tokenization_spaces=True
+                )
+                test_preds = lmap(str.strip, test_preds)
+                write_txt_file(test_preds, os.path.join(training_args.output_dir, "test_generations.txt"))
+
+    if trainer.is_world_process_zero():
+        save_json(eval_results, "all_results.json")
+    return eval_results
+
+
+def _mp_fn(index):
+    # For xla_spawn (TPUs)
+    main()
+
+
+if __name__ == "__main__":
+    main()

examples/seq2seq/initialization_utils.py

@@ -1,20 +0,0 @@
-from typing import List
-
-from torch import nn
-
-
-def init_student(student, teacher):
-    teacher_state_dict = teacher.state_dict()
-    info = student.load_state_dict(teacher_state_dict, strict=False)
-    assert info.missing_keys == [], info.missing_keys
-    return student, info
-
-
-def copy_decoder_layers(teacher, student, l2copy=[0, 2, 4, 7, 9, 11]):
-    copy_layers(teacher.model.decoder.layers, student.model.decoder.layers, l2copy)
-
-
-def copy_layers(teacher_layers: nn.ModuleList, student_layers: nn.ModuleList, layers_to_copy: List) -> None:
-    layers_to_copy = nn.ModuleList([l for i, l in enumerate(teacher_layers) if i in layers_to_copy])
-    assert len(student_layers) == len(layers_to_copy), f"{len(student_layers)} != {len(layers_to_copy)}"
-    student_layers.load_state_dict(layers_to_copy.state_dict())

examples/seq2seq/make_student.py

@@ -0,0 +1,173 @@
+import warnings
+from pathlib import Path
+from typing import List, Tuple, Union
+
+import fire
+from torch import nn
+
+from transformers import AutoModelForSeq2SeqLM, AutoTokenizer, PreTrainedModel
+from transformers.utils import logging
+
+
+logger = logging.get_logger(__name__)
+
+
+def copy_layers(src_layers: nn.ModuleList, dest_layers: nn.ModuleList, layers_to_copy: List[int]) -> None:
+    layers_to_copy = nn.ModuleList([src_layers[i] for i in layers_to_copy])
+    assert len(dest_layers) == len(layers_to_copy), f"{len(dest_layers)} != {len(layers_to_copy)}"
+    dest_layers.load_state_dict(layers_to_copy.state_dict())
+
+
+LAYERS_TO_COPY = {
+    # maps  num layers in teacher -> num_layers in student -> which teacher layers to copy.
+    # 12: bart, 16: pegasus, 6: marian/Helsinki-NLP
+    12: {
+        1: [0],  # This says that if the teacher has 12 layers and the student has 1, copy layer 0 of the teacher
+        2: [0, 6],
+        3: [0, 6, 11],
+        4: [0, 4, 8, 11],
+        6: [0, 2, 4, 7, 9, 11],
+        9: [0, 1, 2, 4, 5, 7, 9, 10, 11],
+        12: list(range(12)),
+    },
+    16: {  # maps  num layers in student -> which teacher layers to copy
+        1: [0],
+        2: [0, 15],
+        3: [0, 8, 15],
+        4: [0, 5, 10, 15],
+        6: [0, 3, 6, 9, 12, 15],
+        8: [0, 2, 4, 6, 8, 10, 12, 15],
+        9: [0, 1, 3, 5, 7, 9, 11, 13, 15],
+        12: [0, 1, 2, 3, 4, 5, 6, 7, 9, 11, 13, 15],
+        16: list(range(16)),
+    },
+    6: {1: [0], 2: [0, 5], 3: [0, 2, 5], 4: [0, 1, 3, 5], 6: list(range(6))},
+}
+LAYERS_TO_SUPERVISE = {
+    # maps  num layers in student -> which teacher layers to copy.
+    6: {1: [5], 2: [3, 5], 3: [1, 4, 5], 4: [1, 2, 4, 5]},
+    12: {1: [11], 2: [5, 11], 3: [3, 7, 11], 6: [1, 3, 5, 8, 10, 11]},
+    16: {1: [15], 4: [4, 9, 12, 15], 8: [1, 3, 5, 7, 9, 11, 13, 15]},
+}
+
+
+def pick_layers_to_copy(n_student, n_teacher):
+    try:
+        val = LAYERS_TO_COPY[n_teacher][n_student]
+        return val
+    except KeyError:
+        if n_student != n_teacher:
+            warnings.warn(
+                f"no hardcoded layers to copy for teacher {n_teacher} -> student {n_student}, defaulting to first {n_student}"
+            )
+        return list(range(n_student))
+
+
+def get_layers_to_supervise(n_student, n_teacher) -> List[int]:
+    """Used or the --supervise_forward kwarg"""
+    if n_student > n_teacher:
+        raise ValueError(f"Cannot perform intermediate supervision for student {n_student} > teacher {n_teacher}")
+    elif n_teacher == n_student:
+        return list(range(n_teacher))
+    elif n_student == 1:
+        return [n_teacher - 1]
+    else:
+        return LAYERS_TO_SUPERVISE[n_teacher][n_student]
+
+
+def create_student_by_copying_alternating_layers(
+    teacher: Union[str, PreTrainedModel],
+    save_path: Union[str, Path] = "student",
+    e: Union[int, None] = None,
+    d: Union[int, None] = None,
+    copy_first_teacher_layers=False,
+    e_layers_to_copy=None,
+    d_layers_to_copy=None,
+    **extra_config_kwargs
+) -> Tuple[PreTrainedModel, List[int], List[int]]:
+    """Make a student by copying alternating layers from a teacher, save it to save_path.
+    Args:
+        teacher: str or PreTrainedModel if str, this will call AutoModelForSeq2SeqLM.from_pretrained(teacher) before
+        copying layers
+        save_path: where to save the student, defaults to student directory.
+        e: how many Encoder layers should the student have, default is fully copy of teacher
+        d: how many Decoder layers should the student have, default is fully copy of teacher
+        copy_first_teacher_layers: [bool] dont copy alternating layers, just the first e/d.
+        **extra_config_kwargs: extra kwargs to pass to the student, by default the teacher config is used.
+
+    Returns:
+        student: new, smaller model.  (Also saves it to save_path)
+        e_layers_to_copy: list of which teacher encoder layers were used
+        d_layers_to_copy: list of which teacher decoder layers were used
+    """
+    _msg = "encoder_layers and decoder_layers cannot be both None-- you would just have an identical teacher."
+    assert (e is not None) or (d is not None), _msg
+    if isinstance(teacher, str):
+        AutoTokenizer.from_pretrained(teacher).save_pretrained(save_path)  # purely for convenience
+        teacher = AutoModelForSeq2SeqLM.from_pretrained(teacher).eval()
+    else:
+
+        assert isinstance(teacher, PreTrainedModel), f"teacher must be a model or string got type {type(teacher)}"
+    init_kwargs = teacher.config.to_diff_dict()
+
+    try:
+        teacher_e, teacher_d = teacher.config.encoder_layers, teacher.config.decoder_layers
+        if e is None:
+            e = teacher_e
+        if d is None:
+            d = teacher_d
+        init_kwargs.update({"encoder_layers": e, "decoder_layers": d})
+    except AttributeError:  # T5
+        teacher_e, teacher_d = teacher.config.num_layers, teacher.config.num_decoder_layers
+        if e is None:
+            e = teacher_e
+        if d is None:
+            d = teacher_d
+        init_kwargs.update({"num_layers": e, "num_decoder_layers": d})
+
+    # Kwargs to instantiate student: teacher kwargs with updated layer numbers + **extra_config_kwargs
+    init_kwargs.update(extra_config_kwargs)
+
+    # Copy weights
+    student_cfg = teacher.config_class(**init_kwargs)
+    student = AutoModelForSeq2SeqLM.from_config(student_cfg)
+    # Start by copying the full teacher state dict this will copy the first N teacher layers to the student.
+    info = student.load_state_dict(teacher.state_dict(), strict=False)
+    assert info.missing_keys == [], info.missing_keys  # every student key should have a teacher keys.
+
+    if copy_first_teacher_layers:  # Our copying is done. We just log and save
+        e_layers_to_copy, d_layers_to_copy = list(range(e)), list(range(d))
+        logger.info(
+            f"Copied encoder layers {e_layers_to_copy} and decoder layers {d_layers_to_copy}. Saving them to {save_path}"
+        )
+        student.save_pretrained(save_path)
+        return student, e_layers_to_copy, d_layers_to_copy
+
+    # Decide which layers of the teacher to copy. Not exactly alternating -- we try to keep first and last layer.
+    if e_layers_to_copy is None:
+        e_layers_to_copy: List[int] = pick_layers_to_copy(e, teacher_e)
+    if d_layers_to_copy is None:
+        d_layers_to_copy: List[int] = pick_layers_to_copy(d, teacher_d)
+
+    try:
+        copy_layers(teacher.model.encoder.layers, student.model.encoder.layers, e_layers_to_copy)
+        copy_layers(teacher.model.decoder.layers, student.model.decoder.layers, d_layers_to_copy)
+    except AttributeError:  # For t5, student.model.encoder.layers is called student.encoder.block
+        copy_layers(teacher.encoder.block, student.encoder.block, e_layers_to_copy)
+        copy_layers(teacher.decoder.block, student.decoder.block, d_layers_to_copy)
+    logger.info(
+        f"Copied encoder layers {e_layers_to_copy} and decoder layers {d_layers_to_copy}. Saving them to {save_path}"
+    )
+    student.config.init_metadata = dict(
+        teacher_type=teacher.config.model_type,
+        copied_encoder_layers=e_layers_to_copy,
+        copied_decoder_layers=d_layers_to_copy,
+    )
+    student.save_pretrained(save_path)
+    # Save information about copying for easier reproducibility
+
+    return student, e_layers_to_copy, d_layers_to_copy
+
+
+if __name__ == "__main__":
+    fire.Fire(create_student_by_copying_alternating_layers)

examples/seq2seq/minify_dataset.py

@@ -1,3 +1,5 @@
+#!/usr/bin/env python
+
 from pathlib import Path
 
 import fire

examples/seq2seq/pack_dataset.py

@@ -1,3 +1,5 @@
+#!/usr/bin/env python
+
 """Fill examples with bitext up to max_tokens without breaking up examples.
 [['I went', 'yo fui'],
 ['to the store', 'a la tienda']

examples/seq2seq/precomputed_pseudo_labels.md

@@ -0,0 +1,43 @@
+### Saved Pseudo-Labels
+These are the generations of various large models on various large **training** sets. All in all they took about 200 GPU hours to produce.
+
+### Available Pseudo-labels
+| Dataset | Model                       | Link                                                                                   | Rouge Scores       | Notes                                                                                                       
+|---------|-----------------------------|----------------------------------------------------------------------------------------|--------------------|-------------------------------------------------------------------------------------------------------------
+| XSUM    | `facebook/bart-large-xsum`    | [download](https://cdn-datasets.huggingface.co/pseudo/xsum/bart_xsum_pl.tgz)          | 49.8/28.0/42.5     |                                                                                                             
+| XSUM    | `google/pegasus-xsum`         | [download](https://cdn-datasets.huggingface.co/pseudo/xsum/pegasus_xsum.tgz)          | 53.3/32.7/46.5     |                                                                                                             
+| XSUM    | `facebook/bart-large-xsum`    | [download](https://cdn-datasets.huggingface.co/pseudo/xsum/xsum_pl2_bart.tgz)         |                   | Bart pseudolabels filtered to those with Rouge2 > 10.0 w GT.                                                 
+| CNN/DM  | `sshleifer/pegasus-cnn-ft-v2` | [download](https://cdn-datasets.huggingface.co/pseudo/cnn_dm/pegasus_cnn_cnn_pls.tgz) | 47.316/26.65/44.56 | do not worry about the fact that train.source is one line shorter.                                          
+| CNN/DM  | `facebook/bart-large-cnn`     | [download](https://cdn-datasets.huggingface.co/pseudo/cnn_dm/cnn_bart_pl.tgz)         |                    | 5K (2%) are missing, there should be 282173                                                                 
+| CNN/DM  | `google/pegasus-xsum`         | [download](https://cdn-datasets.huggingface.co/pseudo/cnn_dm/pegasus_xsum_on_cnn.tgz) | 21.5/6.76/25       | extra labels for xsum distillation  Used max_source_length=512, (and all other pegasus-xsum configuration). 
+| EN-RO   | `Helsinki-NLP/opus-mt-en-ro`  | [download](https://cdn-datasets.huggingface.co/pseudo/wmt_en_ro/opus_mt_en_ro.tgz) |       |  
+| EN-RO   | `facebook/mbart-large-en-ro`  | [download](https://cdn-datasets.huggingface.co/pseudo/wmt_en_ro/mbart_large_en_ro.tgz) |       |  
+
+
+(EN_RO = WMT 2016 English-Romanian).
+
+Example Download Command:
+```bash
+curl -S https://cdn-datasets.huggingface.co/pseudo/xsum/bart_xsum_pl.tgz | tar -xvz -C .
+```
+### Generating New Pseudolabels
+Here is the command I used to generate the pseudolabels in the second row of the table, after downloading XSUM from [here](https://cdn-datasets.huggingface.co/summarization/xsum.tar.gz). 
+
+```bash                                                                         
+python -m torch.distributed.launch --nproc_per_node=8 run_distributed_eval.py \
+    --model_name google/pegasus-xsum \ 
+    --save_dir pegasus_xsum \ 
+    --data_dir xsum \
+    --bs 8 --sync_timeout 60000 \
+    --max_source_length 512 \
+    --type_path train
+```
+
++ These command takes a while to run. For example,  pegasus_cnn_cnn_pls.tgz took 8 hours on 8 GPUs.
++ Pegasus does not work in fp16 :(, Bart, mBART and Marian do.
++ Even if you have 1 GPU, `run_distributed_eval.py` is 10-20% faster than `run_eval.py` because it uses `SortishSampler` to minimize padding computation.
+
+### Contributions
+Feel free to contribute your own pseudolabels via PR. Add a row to this table with a new google drive link (or other command line downloadable link).
+
+

examples/seq2seq/rouge_cli.py

@@ -0,0 +1,17 @@
+import fire
+
+from utils import calculate_rouge, save_json
+
+
+def calculate_rouge_path(pred_path, tgt_path, save_path=None, **kwargs):
+    """Kwargs will be passed to calculate_rouge"""
+    pred_lns = [x.strip() for x in open(pred_path).readlines()]
+    tgt_lns = [x.strip() for x in open(tgt_path).readlines()][: len(pred_lns)]
+    metrics = calculate_rouge(pred_lns, tgt_lns, **kwargs)
+    if save_path is not None:
+        save_json(metrics, save_path, indent=None)
+    return metrics  # these print nicely
+
+
+if __name__ == "__main__":
+    fire.Fire(calculate_rouge_path)

examples/seq2seq/run_distributed_eval.py

@@ -1,3 +1,5 @@
+#!/usr/bin/env python
+
 import argparse
 import shutil
 import time
@@ -15,6 +17,7 @@ from utils import (
     Seq2SeqDataset,
     calculate_bleu,
     calculate_rouge,
+    chunks,
     lmap,
     load_json,
     parse_numeric_n_bool_cl_kwargs,
@@ -38,8 +41,8 @@ def eval_data_dir(
     fp16=False,
     task="summarization",
     local_rank=None,
-    src_lang=None,
-    tgt_lang=None,
+    num_return_sequences=1,
+    dataset_kwargs: Dict = None,
     prefix="",
     **generate_kwargs,
 ) -> Dict:
@@ -54,10 +57,15 @@ def eval_data_dir(
     model = AutoModelForSeq2SeqLM.from_pretrained(model_name).cuda()
     if fp16:
         model = model.half()
+    # determine if we need to increase num_beams
+    use_task_specific_params(model, task)  # update config with task specific params
+    num_beams = generate_kwargs.pop("num_beams", model.config.num_beams)  # AttributeError risk?
+    if num_return_sequences > num_beams:
+        num_beams = num_return_sequences
 
     tokenizer = AutoTokenizer.from_pretrained(model_name)
     logger.info(f"Inferred tokenizer type: {tokenizer.__class__}")  # if this is wrong, check config.model_type.
-    use_task_specific_params(model, task)  # update config with task specific params
+
     if max_source_length is None:
         max_source_length = tokenizer.model_max_length
     if prefix is None:
@@ -69,9 +77,8 @@ def eval_data_dir(
         max_target_length=1024,
         type_path=type_path,
         n_obs=n_obs,
-        src_lang=src_lang,
-        tgt_lang=tgt_lang,
         prefix=prefix,
+        **dataset_kwargs,
     )
     # I set shuffle=True for a more accurate progress bar.
     # If all the longest samples are first, the prog bar estimate is too high at the beginning.
@@ -82,10 +89,14 @@ def eval_data_dir(
         summaries = model.generate(
             input_ids=batch["input_ids"].to(model.device),
             attention_mask=batch["attention_mask"].to(model.device),
+            num_return_sequences=num_return_sequences,
+            num_beams=num_beams,
             **generate_kwargs,
         )
         preds = tokenizer.batch_decode(summaries, skip_special_tokens=True, clean_up_tokenization_spaces=False)
         ids = batch["ids"]
+        if num_return_sequences > 1:
+            preds = chunks(preds, num_return_sequences)  # batch size chunks, each of size num_return_seq
         for i, pred in enumerate(preds):
             results.append(dict(pred=pred, id=ids[i].item()))
     save_json(results, save_path)
@@ -108,7 +119,6 @@ def run_generate():
     parser.add_argument(
         "--type_path", type=str, default="test", help="which subset to evaluate typically train/val/test"
     )
-    parser.add_argument("--reference_path", type=str, required=False, help="like cnn_dm/test.target")
     parser.add_argument("--task", type=str, default="summarization", help="used for task_specific_params + metrics")
     parser.add_argument("--bs", type=int, default=8, required=False, help="batch size")
     parser.add_argument(
@@ -118,6 +128,9 @@ def run_generate():
     parser.add_argument(
         "--n_obs", type=int, default=None, required=False, help="How many observations. Defaults to all."
     )
+    parser.add_argument(
+        "--num_return_sequences", type=int, default=1, required=False, help="How many sequences to return"
+    )
     parser.add_argument(
         "--sync_timeout",
         type=int,
@@ -143,6 +156,11 @@ def run_generate():
     if intermediate_files:
         raise ValueError(f"Found files at {json_save_dir} please move or remove them.")
         # In theory, a node could finish and save before another node hits this. If this happens, we can address later.
+    dataset_kwargs = {}
+    if args.src_lang is not None:
+        dataset_kwargs["src_lang"] = args.src_lang
+    if args.tgt_lang is not None:
+        dataset_kwargs["tgt_lang"] = args.tgt_lang
 
     Path(args.save_dir).mkdir(exist_ok=True)
     results, num_replicas = eval_data_dir(
@@ -156,9 +174,9 @@ def run_generate():
         local_rank=args.local_rank,
         n_obs=args.n_obs,
         max_source_length=args.max_source_length,
+        num_return_sequences=args.num_return_sequences,
         prefix=args.prefix,
-        src_lang=args.src_lang,
-        tgt_lang=args.tgt_lang,
+        dataset_kwargs=dataset_kwargs,
         **generate_kwargs,
     )
 
@@ -167,6 +185,11 @@ def run_generate():
         save_dir.mkdir(exist_ok=True)
         partial_results = gather_results_from_each_node(num_replicas, json_save_dir, args.sync_timeout)
         preds = combine_partial_results(partial_results)
+        if args.num_return_sequences > 1:
+            save_path = save_dir.joinpath("pseudolabel_results.json")
+            print(f"Saving aggregated results at {save_path}, intermediate in {json_save_dir}/")
+            save_json(preds, save_path)
+            return
         tgt_file = Path(args.data_dir).joinpath(args.type_path + ".target")
         labels = [x.rstrip() for x in open(tgt_file).readlines()][: len(preds)]
 

examples/seq2seq/run_eval.py

@@ -1,3 +1,5 @@
+#!/usr/bin/env python
+
 import argparse
 import datetime
 import json
@@ -11,7 +13,7 @@ import torch
 from tqdm import tqdm
 
 from transformers import AutoModelForSeq2SeqLM, AutoTokenizer
-from utils import calculate_bleu, calculate_rouge, parse_numeric_n_bool_cl_kwargs, use_task_specific_params
+from utils import calculate_bleu, calculate_rouge, chunks, parse_numeric_n_bool_cl_kwargs, use_task_specific_params
 
 
 logger = getLogger(__name__)
@@ -20,12 +22,6 @@ logger = getLogger(__name__)
 DEFAULT_DEVICE = "cuda" if torch.cuda.is_available() else "cpu"
 
 
-def chunks(lst, n):
-    """Yield successive n-sized chunks from lst."""
-    for i in range(0, len(lst), n):
-        yield lst[i : i + n]
-
-
 def generate_summaries_or_translations(
     examples: List[str],
     out_file: str,
@@ -156,8 +152,7 @@ def run_generate(verbose=True):
         print(scores)
 
     if args.score_path is not None:
-        path = args.score_path
-        json.dump(scores, open(path, "w"))
+        json.dump(scores, open(args.score_path, "w"))
 
     return scores
 

examples/seq2seq/run_eval_search.py

@@ -1,3 +1,5 @@
+#!/usr/bin/env python
+
 import argparse
 import itertools
 import operator
@@ -5,13 +7,14 @@ import sys
 from collections import OrderedDict
 
 from run_eval import datetime_now, run_generate
+from utils import ROUGE_KEYS
 
 
 # A table of supported tasks and the list of scores in the order of importance to be sorted by.
 # To add a new task, simply list the score names that `run_eval.run_generate()` returns
 task_score_names = {
     "translation": ["bleu"],
-    "summarization": ["rouge1", "rouge2", "rougeL"],
+    "summarization": ROUGE_KEYS,
 }
 
 

examples/seq2seq/save_len_file.py

@@ -1,14 +1,11 @@
+#!/usr/bin/env python
+
 import fire
 from torch.utils.data import DataLoader
 from tqdm import tqdm
 
 from transformers import AutoTokenizer
-
-
-try:
-    from .utils import Seq2SeqDataset, pickle_save
-except ImportError:
-    from utils import Seq2SeqDataset, pickle_save
+from utils import Seq2SeqDataset, pickle_save
 
 
 def save_len_file(

examples/seq2seq/save_randomly_initialized_model.py

@@ -0,0 +1,26 @@
+#!/usr/bin/env python
+
+import fire
+
+from transformers import AutoConfig, AutoModelForSeq2SeqLM, AutoTokenizer
+
+
+def save_randomly_initialized_version(config_name: str, save_dir: str, **config_kwargs):
+    """Save a randomly initialized version of a model using a pretrained config.
+    Args:
+        config_name: which config to use
+        save_dir: where to save the resulting model and tokenizer
+        config_kwargs: Passed to AutoConfig
+
+    Usage::
+        save_randomly_initialized_version("facebook/bart-large-cnn", "distilbart_random_cnn_6_3", encoder_layers=6, decoder_layers=3, num_beams=3)
+    """
+    cfg = AutoConfig.from_pretrained(config_name, **config_kwargs)
+    model = AutoModelForSeq2SeqLM.from_config(cfg)
+    model.save_pretrained(save_dir)
+    AutoTokenizer.from_pretrained(config_name).save_pretrained(save_dir)
+    return model
+
+
+if __name__ == "__main__":
+    fire.Fire(save_randomly_initialized_version)

examples/seq2seq/sentence_splitter.py

@@ -0,0 +1,22 @@
+import re
+
+from filelock import FileLock
+
+
+try:
+    import nltk
+
+    NLTK_AVAILABLE = True
+except (ImportError, ModuleNotFoundError):
+    NLTK_AVAILABLE = False
+
+if NLTK_AVAILABLE:
+    with FileLock(".lock") as lock:
+        nltk.download("punkt", quiet=True)
+
+
+def add_newline_to_end_of_each_sentence(x: str) -> str:
+    """This was added to get rougeLsum scores matching published rougeL scores for BART and PEGASUS."""
+    re.sub("<n>", "", x)  # remove pegasus newline char
+    assert NLTK_AVAILABLE, "nltk must be installed to separate newlines between sentences. (pip install nltk)"
+    return "\n".join(nltk.sent_tokenize(x))

examples/seq2seq/seq2seq_trainer.py

@@ -0,0 +1,192 @@
+import logging
+from typing import Any, Dict, Optional, Tuple, Union
+
+import torch
+from torch import nn
+from torch.utils.data import DistributedSampler, RandomSampler
+
+from transformers import Trainer
+from transformers.configuration_fsmt import FSMTConfig
+from transformers.file_utils import is_torch_tpu_available
+from transformers.optimization import (
+    Adafactor,
+    AdamW,
+    get_constant_schedule,
+    get_constant_schedule_with_warmup,
+    get_cosine_schedule_with_warmup,
+    get_cosine_with_hard_restarts_schedule_with_warmup,
+    get_linear_schedule_with_warmup,
+    get_polynomial_decay_schedule_with_warmup,
+)
+from transformers.trainer_pt_utils import get_tpu_sampler
+
+
+try:
+    from .utils import label_smoothed_nll_loss
+except ImportError:
+    from utils import label_smoothed_nll_loss
+
+
+logger = logging.getLogger(__name__)
+
+arg_to_scheduler = {
+    "linear": get_linear_schedule_with_warmup,
+    "cosine": get_cosine_schedule_with_warmup,
+    "cosine_w_restarts": get_cosine_with_hard_restarts_schedule_with_warmup,
+    "polynomial": get_polynomial_decay_schedule_with_warmup,
+    "constant": get_constant_schedule,
+    "constant_w_warmup": get_constant_schedule_with_warmup,
+}
+arg_to_scheduler_choices = sorted(arg_to_scheduler.keys())
+
+
+class Seq2SeqTrainer(Trainer):
+    def __init__(self, config, data_args, *args, **kwargs):
+        super().__init__(*args, **kwargs)
+        self.config = config
+        self.data_args = data_args
+        self.max_gen_length = data_args.val_max_target_length
+        self.vocab_size = self.config.tgt_vocab_size if isinstance(self.config, FSMTConfig) else self.config.vocab_size
+
+    def create_optimizer_and_scheduler(self, num_training_steps: int):
+        """
+        Setup the optimizer and the learning rate scheduler.
+
+        We provide a reasonable default that works well. If you want to use something else, you can pass a tuple in the
+        Trainer's init through :obj:`optimizers`, or subclass and override this method in a subclass.
+        """
+        if self.optimizer is None:
+            no_decay = ["bias", "LayerNorm.weight"]
+            optimizer_grouped_parameters = [
+                {
+                    "params": [p for n, p in self.model.named_parameters() if not any(nd in n for nd in no_decay)],
+                    "weight_decay": self.args.weight_decay,
+                },
+                {
+                    "params": [p for n, p in self.model.named_parameters() if any(nd in n for nd in no_decay)],
+                    "weight_decay": 0.0,
+                },
+            ]
+            if self.args.adafactor:
+                self.optimizer = Adafactor(
+                    optimizer_grouped_parameters,
+                    lr=self.args.learning_rate,
+                    scale_parameter=False,
+                    relative_step=False,
+                )
+
+            else:
+                self.optimizer = AdamW(
+                    optimizer_grouped_parameters, lr=self.args.learning_rate, eps=self.args.adam_epsilon
+                )
+
+        if self.lr_scheduler is None:
+            self.lr_scheduler = self._get_lr_scheduler(num_training_steps)
+        else:  # ignoring --lr_scheduler
+            logger.warn("scheduler is passed to `Seq2SeqTrainer`, `--lr_scheduler` arg is ignored.")
+
+    def _get_lr_scheduler(self, num_training_steps):
+        schedule_func = arg_to_scheduler[self.args.lr_scheduler]
+        if self.args.lr_scheduler == "constant":
+            scheduler = schedule_func(self.optimizer)
+        elif self.args.lr_scheduler == "constant_w_warmup":
+            scheduler = schedule_func(self.optimizer, num_warmup_steps=self.args.warmup_steps)
+        else:
+            scheduler = schedule_func(
+                self.optimizer, num_warmup_steps=self.args.warmup_steps, num_training_steps=num_training_steps
+            )
+        return scheduler
+
+    def _get_train_sampler(self) -> Optional[torch.utils.data.sampler.Sampler]:
+        if isinstance(self.train_dataset, torch.utils.data.IterableDataset):
+            return None
+        elif is_torch_tpu_available():
+            return get_tpu_sampler(self.train_dataset)
+        else:
+            if self.args.sortish_sampler:
+                self.train_dataset.make_sortish_sampler(
+                    self.args.per_device_train_batch_size, distributed=self.args.n_gpu > 1
+                )
+
+            return (
+                RandomSampler(self.train_dataset)
+                if self.args.local_rank == -1
+                else DistributedSampler(self.train_dataset)
+            )
+
+    def compute_loss(self, model, inputs):
+        labels = inputs.pop("labels")
+        outputs = model(**inputs, use_cache=False)
+        logits = outputs[0]
+        return self._compute_loss(logits, labels)
+
+    def _compute_loss(self, logits, labels):
+        if self.args.label_smoothing == 0:
+            # Same behavior as modeling_bart.py
+            loss_fct = torch.nn.CrossEntropyLoss(ignore_index=self.config.pad_token_id)
+            assert logits.shape[-1] == self.vocab_size
+            loss = loss_fct(logits.view(-1, logits.shape[-1]), labels.view(-1))
+        else:
+            lprobs = torch.nn.functional.log_softmax(logits, dim=-1)
+            loss, nll_loss = label_smoothed_nll_loss(
+                lprobs, labels, self.args.label_smoothing, ignore_index=self.config.pad_token_id
+            )
+        return loss
+
+    def prediction_step(
+        self, model: nn.Module, inputs: Dict[str, Union[torch.Tensor, Any]], prediction_loss_only: bool
+    ) -> Tuple[Optional[float], Optional[torch.Tensor], Optional[torch.Tensor]]:
+        """
+        Perform an evaluation step on :obj:`model` using obj:`inputs`.
+
+        Subclass and override to inject custom behavior.
+
+        Args:
+            model (:obj:`nn.Module`):
+                The model to evaluate.
+            inputs (:obj:`Dict[str, Union[torch.Tensor, Any]]`):
+                The inputs and targets of the model.
+
+                The dictionary will be unpacked before being fed to the model. Most models expect the targets under the
+                argument :obj:`labels`. Check your model's documentation for all accepted arguments.
+            prediction_loss_only (:obj:`bool`):
+                Whether or not to return the loss only.
+
+        Return:
+            Tuple[Optional[float], Optional[torch.Tensor], Optional[torch.Tensor]]:
+            A tuple with the loss, logits and labels (each being optional).
+        """
+        inputs = self._prepare_inputs(inputs)
+
+        with torch.no_grad():
+            if self.args.predict_with_generate and not self.args.prediction_loss_only:
+                generated_tokens = model.generate(
+                    inputs["input_ids"],
+                    attention_mask=inputs["attention_mask"],
+                    use_cache=True,
+                    num_beams=self.data_args.eval_beams,
+                    max_length=self.max_gen_length,
+                )
+                # in case the batch is shorter than max length, the output should be padded
+                generated_tokens = self._pad_tensors_to_max_len(generated_tokens, self.max_gen_length)
+
+            labels_out = inputs.get("labels")
+            # Call forward again to get loss # TODO: avoidable?
+            outputs = model(**inputs, use_cache=False)
+            loss = self._compute_loss(outputs[1], labels_out)
+            loss = loss.mean().item()
+            if self.args.prediction_loss_only:
+                return (loss, None, None)
+
+            logits = generated_tokens if self.args.predict_with_generate else outputs[1]
+
+        labels_out = labels_out.detach()
+        labels = self._pad_tensors_to_max_len(labels_out, self.max_gen_length)
+        return (loss, logits.detach(), labels)
+
+    def _pad_tensors_to_max_len(self, tensor, max_length):
+        padded_tensor = self.config.pad_token_id * torch.ones(
+            (tensor.shape[0], max_length), dtype=tensor.dtype, device=tensor.device
+        )
+        padded_tensor[:, : tensor.shape[-1]] = tensor
+        return padded_tensor

examples/seq2seq/test_bash_script.py

@@ -1,3 +1,5 @@
+#!/usr/bin/env python
+
 import argparse
 import os
 import sys

examples/seq2seq/test_calculate_rouge.py

@@ -0,0 +1,80 @@
+from collections import defaultdict
+from pathlib import Path
+
+import pandas as pd
+
+from rouge_cli import calculate_rouge_path
+from utils import calculate_rouge
+
+
+PRED = [
+    'Prosecutor: "No videos were used in the crash investigation" German papers say they saw a cell phone video of the final seconds on board Flight 9525. The Germanwings co-pilot says he had a "previous episode of severe depression" German airline confirms it knew of Andreas Lubitz\'s depression years before he took control.',
+    "The Palestinian Authority officially becomes the 123rd member of the International Criminal Court. The formal accession was marked with a ceremony at The Hague, in the Netherlands. The Palestinians signed the ICC's founding Rome Statute in January. Israel and the United States opposed the Palestinians' efforts to join the body.",
+    "Amnesty International releases its annual report on the death penalty. The report catalogs the use of state-sanctioned killing as a punitive measure across the globe. At least 607 people were executed around the world in 2014, compared to 778 in 2013. The U.S. remains one of the worst offenders for imposing capital punishment.",
+]
+
+TGT = [
+    'Marseille prosecutor says "so far no videos were used in the crash investigation" despite media reports . Journalists at Bild and Paris Match are "very confident" the video clip is real, an editor says . Andreas Lubitz had informed his Lufthansa training school of an episode of severe depression, airline says .',
+    "Membership gives the ICC jurisdiction over alleged crimes committed in Palestinian territories since last June . Israel and the United States opposed the move, which could open the door to war crimes investigations against Israelis .",
+    "Amnesty's annual death penalty report catalogs encouraging signs, but setbacks in numbers of those sentenced to death . Organization claims that governments around the world are using the threat of terrorism to advance executions . The number of executions worldwide has gone down by almost 22% compared with 2013, but death sentences up by 28% .",
+]
+
+
+def test_disaggregated_scores_are_determinstic():
+    no_aggregation = calculate_rouge(PRED, TGT, bootstrap_aggregation=False, rouge_keys=["rouge2", "rougeL"])
+    assert isinstance(no_aggregation, defaultdict)
+    no_aggregation_just_r2 = calculate_rouge(PRED, TGT, bootstrap_aggregation=False, rouge_keys=["rouge2"])
+    assert (
+        pd.DataFrame(no_aggregation["rouge2"]).fmeasure.mean()
+        == pd.DataFrame(no_aggregation_just_r2["rouge2"]).fmeasure.mean()
+    )
+
+
+def test_newline_cnn_improvement():
+    k = "rougeLsum"
+    score = calculate_rouge(PRED, TGT, newline_sep=True, rouge_keys=[k])[k]
+    score_no_sep = calculate_rouge(PRED, TGT, newline_sep=False, rouge_keys=[k])[k]
+    assert score > score_no_sep
+
+
+def test_newline_irrelevant_for_other_metrics():
+    k = ["rouge1", "rouge2", "rougeL"]
+    score_sep = calculate_rouge(PRED, TGT, newline_sep=True, rouge_keys=k)
+    score_no_sep = calculate_rouge(PRED, TGT, newline_sep=False, rouge_keys=k)
+    assert score_sep == score_no_sep
+
+
+def test_single_sent_scores_dont_depend_on_newline_sep():
+    pred = [
+        "Her older sister, Margot Frank, died in 1945, a month earlier than previously thought.",
+        'Marseille prosecutor says "so far no videos were used in the crash investigation" despite media reports .',
+    ]
+    tgt = [
+        "Margot Frank, died in 1945, a month earlier than previously thought.",
+        'Prosecutor: "No videos were used in the crash investigation" German papers say they saw a cell phone video of the final seconds on board Flight 9525.',
+    ]
+    assert calculate_rouge(pred, tgt, newline_sep=True) == calculate_rouge(pred, tgt, newline_sep=False)
+
+
+def test_pegasus_newline():
+
+    pred = [
+        """" "a person who has such a video needs to immediately give it to the investigators," prosecutor says .<n> "it is a very disturbing scene," editor-in-chief of bild online tells "erin burnett: outfront" """
+    ]
+    tgt = [
+        """ Marseille prosecutor says "so far no videos were used in the crash investigation" despite media reports . Journalists at Bild and Paris Match are "very confident" the video clip is real, an editor says . Andreas Lubitz had informed his Lufthansa training school of an episode of severe depression, airline says ."""
+    ]
+
+    prev_score = calculate_rouge(pred, tgt, rouge_keys=["rougeLsum"], newline_sep=False)["rougeLsum"]
+    new_score = calculate_rouge(pred, tgt, rouge_keys=["rougeLsum"])["rougeLsum"]
+    assert new_score > prev_score
+
+
+def test_rouge_cli():
+    data_dir = Path("examples/seq2seq/test_data/wmt_en_ro")
+    metrics = calculate_rouge_path(data_dir.joinpath("test.source"), data_dir.joinpath("test.target"))
+    assert isinstance(metrics, dict)
+    metrics_default_dict = calculate_rouge_path(
+        data_dir.joinpath("test.source"), data_dir.joinpath("test.target"), bootstrap_aggregation=False
+    )
+    assert isinstance(metrics_default_dict, defaultdict)

examples/seq2seq/test_datasets.py

@@ -6,14 +6,13 @@ import numpy as np
 import pytest
 from torch.utils.data import DataLoader
 
+from pack_dataset import pack_data_dir
+from save_len_file import save_len_file
+from test_seq2seq_examples import ARTICLES, BART_TINY, MARIAN_TINY, MBART_TINY, SUMMARIES, T5_TINY, make_test_data_dir
 from transformers import AutoTokenizer
 from transformers.modeling_bart import shift_tokens_right
 from transformers.testing_utils import slow
-
-from .pack_dataset import pack_data_dir
-from .save_len_file import save_len_file
-from .test_seq2seq_examples import ARTICLES, BART_TINY, MARIAN_TINY, MBART_TINY, SUMMARIES, T5_TINY, make_test_data_dir
-from .utils import FAIRSEQ_AVAILABLE, DistributedSortishSampler, LegacySeq2SeqDataset, Seq2SeqDataset
+from utils import FAIRSEQ_AVAILABLE, DistributedSortishSampler, LegacySeq2SeqDataset, Seq2SeqDataset
 
 
 BERT_BASE_CASED = "bert-base-cased"
@@ -186,3 +185,36 @@ def test_distributed_sortish_sampler_splits_indices_between_procs():
     ids1 = set(DistributedSortishSampler(ds, 256, num_replicas=2, rank=0, add_extra_examples=False))
     ids2 = set(DistributedSortishSampler(ds, 256, num_replicas=2, rank=1, add_extra_examples=False))
     assert ids1.intersection(ids2) == set()
+
+
+@pytest.mark.parametrize(
+    "tok_name",
+    [
+        MBART_TINY,
+        MARIAN_TINY,
+        T5_TINY,
+        BART_TINY,
+        PEGASUS_XSUM,
+    ],
+)
+def test_dataset_kwargs(tok_name):
+    tokenizer = AutoTokenizer.from_pretrained(tok_name)
+    if tok_name == MBART_TINY:
+        train_dataset = Seq2SeqDataset(
+            tokenizer,
+            data_dir=make_test_data_dir(),
+            type_path="train",
+            max_source_length=4,
+            max_target_length=8,
+            src_lang="EN",
+            tgt_lang="FR",
+        )
+        kwargs = train_dataset.dataset_kwargs
+        assert "src_lang" in kwargs and "tgt_lang" in kwargs
+    else:
+        train_dataset = Seq2SeqDataset(
+            tokenizer, data_dir=make_test_data_dir(), type_path="train", max_source_length=4, max_target_length=8
+        )
+        kwargs = train_dataset.dataset_kwargs
+        assert "add_prefix_space" not in kwargs if tok_name != BART_TINY else "add_prefix_space" in kwargs
+        assert len(kwargs) == 1 if tok_name == BART_TINY else len(kwargs) == 0

examples/seq2seq/test_finetune_trainer.py

@@ -0,0 +1,107 @@
+import os
+import sys
+import tempfile
+from unittest.mock import patch
+
+from transformers.testing_utils import slow
+from transformers.trainer_callback import TrainerState
+from transformers.trainer_utils import set_seed
+
+from .finetune_trainer import main
+from .test_seq2seq_examples import MBART_TINY
+
+
+set_seed(42)
+MARIAN_MODEL = "sshleifer/student_marian_en_ro_6_1"
+
+
+def test_finetune_trainer():
+    output_dir = run_trainer(1, "12", MBART_TINY, 1)
+    logs = TrainerState.load_from_json(os.path.join(output_dir, "trainer_state.json")).log_history
+    eval_metrics = [log for log in logs if "eval_loss" in log.keys()]
+    first_step_stats = eval_metrics[0]
+    assert "eval_bleu" in first_step_stats
+
+
+@slow
+def test_finetune_trainer_slow():
+    # TODO(SS): This will fail on devices with more than 1 GPU.
+    # There is a missing call to __init__process_group somewhere
+    output_dir = run_trainer(eval_steps=2, max_len="128", model_name=MARIAN_MODEL, num_train_epochs=3)
+
+    # Check metrics
+    logs = TrainerState.load_from_json(os.path.join(output_dir, "trainer_state.json")).log_history
+    eval_metrics = [log for log in logs if "eval_loss" in log.keys()]
+    first_step_stats = eval_metrics[0]
+    last_step_stats = eval_metrics[-1]
+
+    assert first_step_stats["eval_bleu"] < last_step_stats["eval_bleu"]  # model learned nothing
+    assert isinstance(last_step_stats["eval_bleu"], float)
+
+    # test if do_predict saves generations and metrics
+    contents = os.listdir(output_dir)
+    contents = {os.path.basename(p) for p in contents}
+    assert "test_generations.txt" in contents
+    assert "test_results.json" in contents
+
+
+def run_trainer(eval_steps: int, max_len: str, model_name: str, num_train_epochs: int):
+    data_dir = "examples/seq2seq/test_data/wmt_en_ro"
+    output_dir = tempfile.mkdtemp(prefix="test_output")
+    argv = [
+        "--model_name_or_path",
+        model_name,
+        "--data_dir",
+        data_dir,
+        "--output_dir",
+        output_dir,
+        "--overwrite_output_dir",
+        "--n_train",
+        "8",
+        "--n_val",
+        "8",
+        "--max_source_length",
+        max_len,
+        "--max_target_length",
+        max_len,
+        "--val_max_target_length",
+        max_len,
+        "--do_train",
+        "--do_eval",
+        "--do_predict",
+        "--num_train_epochs",
+        str(num_train_epochs),
+        "--per_device_train_batch_size",
+        "4",
+        "--per_device_eval_batch_size",
+        "4",
+        "--learning_rate",
+        "3e-4",
+        "--warmup_steps",
+        "8",
+        "--evaluate_during_training",
+        "--predict_with_generate",
+        "--logging_steps",
+        0,
+        "--save_steps",
+        str(eval_steps),
+        "--eval_steps",
+        str(eval_steps),
+        "--sortish_sampler",
+        "--label_smoothing",
+        "0.1",
+        # "--eval_beams",
+        # "2",
+        "--adafactor",
+        "--task",
+        "translation",
+        "--tgt_lang",
+        "ro_RO",
+        "--src_lang",
+        "en_XX",
+    ]
+    testargs = ["finetune_trainer.py"] + argv
+    with patch.object(sys, "argv", testargs):
+        main()
+
+    return output_dir

examples/seq2seq/test_fsmt_bleu_score.py

@@ -14,19 +14,13 @@
 # limitations under the License.
 
 import io
-import unittest
-
-
-try:
-    from .utils import calculate_bleu
-except ImportError:
-    from utils import calculate_bleu
-
 import json
+import unittest
 
 from parameterized import parameterized
 from transformers import FSMTForConditionalGeneration, FSMTTokenizer
 from transformers.testing_utils import get_tests_dir, require_torch, slow, torch_device
+from utils import calculate_bleu
 
 
 filename = get_tests_dir() + "/test_data/fsmt/fsmt_val_data.json"

examples/seq2seq/test_make_student.py

@@ -0,0 +1,39 @@
+import tempfile
+import unittest
+
+from make_student import create_student_by_copying_alternating_layers
+from transformers import AutoConfig
+from transformers.file_utils import cached_property
+from transformers.testing_utils import require_torch
+
+
+TINY_BART = "sshleifer/bart-tiny-random"
+TINY_T5 = "patrickvonplaten/t5-tiny-random"
+
+
+@require_torch
+class MakeStudentTester(unittest.TestCase):
+    @cached_property
+    def teacher_config(self):
+        return AutoConfig.from_pretrained(TINY_BART)
+
+    def test_valid_t5(self):
+        student, *_ = create_student_by_copying_alternating_layers(TINY_T5, tempfile.mkdtemp(), e=1, d=1)
+        self.assertEqual(student.config.num_hidden_layers, 1)
+
+    def test_asymmetric_t5(self):
+        student, *_ = create_student_by_copying_alternating_layers(TINY_T5, tempfile.mkdtemp(), e=1, d=None)
+
+    def test_same_decoder_small_encoder(self):
+        student, *_ = create_student_by_copying_alternating_layers(TINY_BART, tempfile.mkdtemp(), e=1, d=None)
+        self.assertEqual(student.config.encoder_layers, 1)
+        self.assertEqual(student.config.decoder_layers, self.teacher_config.encoder_layers)
+
+    def test_small_enc_small_dec(self):
+        student, *_ = create_student_by_copying_alternating_layers(TINY_BART, tempfile.mkdtemp(), e=1, d=1)
+        self.assertEqual(student.config.encoder_layers, 1)
+        self.assertEqual(student.config.decoder_layers, 1)
+
+    def test_raises_assert(self):
+        with self.assertRaises(AssertionError):
+            create_student_by_copying_alternating_layers(TINY_BART, tempfile.mkdtemp(), e=None, d=None)

examples/seq2seq/test_seq2seq_examples.py

@@ -20,7 +20,7 @@ from run_eval_search import run_search
 from transformers import AutoConfig, AutoModelForSeq2SeqLM
 from transformers.hf_api import HfApi
 from transformers.testing_utils import CaptureStderr, CaptureStdout, require_multigpu, require_torch_and_cuda, slow
-from utils import label_smoothed_nll_loss, lmap, load_json
+from utils import ROUGE_KEYS, label_smoothed_nll_loss, lmap, load_json
 
 
 logging.basicConfig(level=logging.DEBUG)
@@ -86,7 +86,6 @@ CHEAP_ARGS = {
     "n_val": -1,
     "n_test": -1,
     "student_encoder_layers": 1,
-    "alpha_encoder_loss": 0.0,
     "freeze_encoder": False,
     "auto_scale_batch_size": False,
 }
@@ -145,6 +144,7 @@ class TestSummarizationDistiller(unittest.TestCase):
         assert not failures, f"The following models could not be loaded through AutoConfig: {failures}"
 
     @require_multigpu
+    @unittest.skip("Broken at the moment")
     def test_multigpu(self):
         updates = dict(
             no_teacher=True,
@@ -229,7 +229,6 @@ class TestSummarizationDistiller(unittest.TestCase):
 
         evaluate_checkpoint(ckpts[0], dest_dir=Path(tempfile.mkdtemp()))
 
-    @unittest.skip("T5 distillation is broken at the moment")
     def test_distill_t5(self):
         updates = dict(
             student_encoder_layers=1,
@@ -254,7 +253,6 @@ class TestSummarizationDistiller(unittest.TestCase):
             model_name_or_path="sshleifer/tinier_bart",
             teacher=CHEAP_ARGS["model_name_or_path"],
             val_check_interval=0.5,
-            alpha_encoder_loss=0.4,
         )
         default_updates.update(updates)
         args_d: dict = CHEAP_ARGS.copy()
@@ -364,7 +362,7 @@ def test_run_eval_search(model):
         if "translation" in task:
             expected_strings.append("bleu")
         else:
-            expected_strings.extend(["rouge1", "rouge2", "rougeL"])
+            expected_strings.extend(ROUGE_KEYS)
         for w in expected_strings:
             assert w in cs.out
         for w in un_expected_strings:
@@ -424,6 +422,10 @@ def test_finetune(model):
         assert bart.decoder.embed_tokens == bart.encoder.embed_tokens
         assert bart.decoder.embed_tokens == bart.shared
 
+    example_batch = load_json(module.output_dir / "text_batch.json")
+    assert isinstance(example_batch, dict)
+    assert len(example_batch) >= 4
+
 
 def test_finetune_extra_model_args():
     args_d: dict = CHEAP_ARGS.copy()

examples/seq2seq/train_distilbart_xsum.sh

@@ -1,21 +1,20 @@
 #!/usr/bin/env bash
 export PYTHONPATH="../":"${PYTHONPATH}"
-export BS=16
-export GAS=2
 python distillation.py \
+  --teacher facebook/bart-large-xsum --data_dir xsum \
+  --student_decoder_layers 6 --student_encoder_layers 12 \
+  --freeze_encoder --freeze_embeds \
   --learning_rate=3e-4 \
   --do_train \
   --do_predict \
-  --fp16 \
-  --val_check_interval 0.1 --n_val 1000 \
-  --teacher facebook/bart-large-xsum --data_dir $XSUM_DIR \
+  --fp16 --fp16_opt_level=O1 \
+  --val_check_interval 0.1 --n_val 1000 --eval_beams 2 --length_penalty=0.5 \
   --max_target_length=60 --val_max_target_length=60 --test_max_target_length=100 \
-  --student_decoder_layers 6 --student_encoder_layers 12 \
-  --freeze_encoder --freeze_embeds \
   --model_name_or_path IGNORED \
-  --alpha_hid=3. --length_penalty=0.5 \
-  --train_batch_size=$BS --eval_batch_size=$BS --gradient_accumulation_steps=$GAS --num_train_epochs=6 \
-  --tokenizer_name facebook/bart-large \
+  --alpha_hid=3. \
+  --train_batch_size=16 --eval_batch_size=16 --gradient_accumulation_steps=2 \
+  --sortish_sampler \
+  --num_train_epochs=6 \
   --warmup_steps 500 \
   --output_dir distilbart_xsum_12_6 \
   "$@"

examples/seq2seq/utils.py

@@ -7,7 +7,7 @@ import pickle
 import socket
 from logging import getLogger
 from pathlib import Path
-from typing import Callable, Dict, Iterable, List, Union
+from typing import Callable, Dict, Iterable, List, Tuple, Union
 
 import git
 import numpy as np
@@ -18,8 +18,10 @@ from sacrebleu import corpus_bleu
 from torch import nn
 from torch.utils.data import Dataset, Sampler
 
-from transformers import BartTokenizer
+from sentence_splitter import add_newline_to_end_of_each_sentence
+from transformers import BartTokenizer, EvalPrediction, PreTrainedTokenizer, T5Tokenizer
 from transformers.file_utils import cached_property
+from transformers.modeling_bart import shift_tokens_right
 
 
 try:
@@ -51,19 +53,6 @@ def label_smoothed_nll_loss(lprobs, target, epsilon, ignore_index=-100):
     return loss, nll_loss
 
 
-def encode_line(tokenizer, line, max_length, pad_to_max_length=True, return_tensors="pt"):
-    """Only used by LegacyDataset"""
-    extra_kw = {"add_prefix_space": True} if isinstance(tokenizer, BartTokenizer) else {}
-    return tokenizer(
-        [line],
-        max_length=max_length,
-        padding="max_length" if pad_to_max_length else None,
-        truncation=True,
-        return_tensors=return_tensors,
-        **extra_kw,
-    )
-
-
 def lmap(f: Callable, x: Iterable) -> List:
     """list(map(f, x))"""
     return list(map(f, x))
@@ -74,6 +63,35 @@ def calculate_bleu(output_lns, refs_lns, **kwargs) -> dict:
     return {"bleu": round(corpus_bleu(output_lns, [refs_lns], **kwargs).score, 4)}
 
 
+def build_compute_metrics_fn(task_name: str, tokenizer: PreTrainedTokenizer) -> Callable[[EvalPrediction], Dict]:
+    def non_pad_len(tokens: np.ndarray) -> int:
+        return np.count_nonzero(tokens != tokenizer.pad_token_id)
+
+    def decode_pred(pred: EvalPrediction) -> Tuple[List[str], List[str]]:
+        pred_str = tokenizer.batch_decode(pred.predictions, skip_special_tokens=True)
+        label_str = tokenizer.batch_decode(pred.label_ids, skip_special_tokens=True)
+        pred_str = lmap(str.strip, pred_str)
+        label_str = lmap(str.strip, label_str)
+        return pred_str, label_str
+
+    def summarization_metrics(pred: EvalPrediction) -> Dict:
+        pred_str, label_str = decode_pred(pred)
+        rouge: Dict = calculate_rouge(pred_str, label_str)
+        summ_len = np.round(np.mean(lmap(non_pad_len, pred.predictions)), 1)
+        rouge.update({"gen_len": summ_len})
+        return rouge
+
+    def translation_metrics(pred: EvalPrediction) -> Dict:
+        pred_str, label_str = decode_pred(pred)
+        bleu: Dict = calculate_bleu(pred_str, label_str)
+        gen_len = np.round(np.mean(lmap(non_pad_len, pred.predictions)), 1)
+        bleu.update({"gen_len": gen_len})
+        return bleu
+
+    compute_metrics_fn = summarization_metrics if "summarization" in task_name else translation_metrics
+    return compute_metrics_fn
+
+
 def trim_batch(
     input_ids,
     pad_token_id,
@@ -96,9 +114,8 @@ class AbstractSeq2SeqDataset(Dataset):
         max_target_length,
         type_path="train",
         n_obs=None,
-        src_lang=None,
-        tgt_lang=None,
         prefix="",
+        **dataset_kwargs
     ):
         super().__init__()
         self.src_file = Path(data_dir).joinpath(type_path + ".source")
@@ -119,9 +136,8 @@ class AbstractSeq2SeqDataset(Dataset):
         if n_obs is not None:
             self.src_lens = self.src_lens[:n_obs]
         self.pad_token_id = self.tokenizer.pad_token_id
-        self.src_lang = src_lang
-        self.tgt_lang = tgt_lang
-        self.add_prefix_space = isinstance(self.tokenizer, BartTokenizer)
+        self.dataset_kwargs = dataset_kwargs
+        dataset_kwargs.update({"add_prefix_space": True} if isinstance(self.tokenizer, BartTokenizer) else {})
 
     def __len__(self):
         return len(self.src_lens)
@@ -181,8 +197,8 @@ class LegacySeq2SeqDataset(AbstractSeq2SeqDataset):
         tgt_line = linecache.getline(str(self.tgt_file), index).rstrip("\n")
         assert source_line, f"empty source line for index {index}"
         assert tgt_line, f"empty tgt line for index {index}"
-        source_inputs = encode_line(self.tokenizer, source_line, self.max_source_length)
-        target_inputs = encode_line(self.tokenizer, tgt_line, self.max_target_length)
+        source_inputs = self.encode_line(self.tokenizer, source_line, self.max_source_length)
+        target_inputs = self.encode_line(self.tokenizer, tgt_line, self.max_target_length)
 
         source_ids = source_inputs["input_ids"].squeeze()
         target_ids = target_inputs["input_ids"].squeeze()
@@ -193,6 +209,17 @@ class LegacySeq2SeqDataset(AbstractSeq2SeqDataset):
             "labels": target_ids,
         }
 
+    def encode_line(self, tokenizer, line, max_length, pad_to_max_length=True, return_tensors="pt"):
+        """Only used by LegacyDataset"""
+        return tokenizer(
+            [line],
+            max_length=max_length,
+            padding="max_length" if pad_to_max_length else None,
+            truncation=True,
+            return_tensors=return_tensors,
+            **self.dataset_kwargs,
+        )
+
     def collate_fn(self, batch) -> Dict[str, torch.Tensor]:
         input_ids = torch.stack([x["input_ids"] for x in batch])
         masks = torch.stack([x["attention_mask"] for x in batch])
@@ -223,18 +250,80 @@ class Seq2SeqDataset(AbstractSeq2SeqDataset):
         """Call prepare_seq2seq_batch."""
         batch_encoding: Dict[str, torch.Tensor] = self.tokenizer.prepare_seq2seq_batch(
             [x["src_texts"] for x in batch],
-            src_lang=self.src_lang,
             tgt_texts=[x["tgt_texts"] for x in batch],
-            tgt_lang=self.tgt_lang,
             max_length=self.max_source_length,
             max_target_length=self.max_target_length,
             return_tensors="pt",
-            add_prefix_space=self.add_prefix_space,
+            **self.dataset_kwargs,
         ).data
         batch_encoding["ids"] = torch.tensor([x["id"] for x in batch])
         return batch_encoding
 
 
+class Seq2SeqDataCollator:
+    def __init__(self, tokenizer, data_args, tpu_num_cores=None):
+        self.tokenizer = tokenizer
+        self.pad_token_id = tokenizer.pad_token_id
+        assert (
+            self.pad_token_id is not None
+        ), f"pad_token_id is not defined for ({self.tokenizer.__class__.__name__}), it must be defined."
+        self.data_args = data_args
+        self.tpu_num_cores = tpu_num_cores
+        self.dataset_kwargs = {"add_prefix_space": isinstance(tokenizer, BartTokenizer)}
+        if data_args.src_lang is not None:
+            self.dataset_kwargs["src_lang"] = data_args.src_lang
+        if data_args.tgt_lang is not None:
+            self.dataset_kwargs["tgt_lang"] = data_args.tgt_lang
+
+    def __call__(self, batch) -> Dict[str, torch.Tensor]:
+        if hasattr(self.tokenizer, "prepare_seq2seq_batch"):
+            batch = self._encode(batch)
+            input_ids, attention_mask, labels = (
+                batch["input_ids"],
+                batch["attention_mask"],
+                batch["labels"],
+            )
+        else:
+            input_ids = torch.stack([x["input_ids"] for x in batch])
+            attention_mask = torch.stack([x["attention_mask"] for x in batch])
+            labels = torch.stack([x["labels"] for x in batch])
+
+            labels = trim_batch(labels, self.pad_token_id)
+            input_ids, attention_mask = trim_batch(input_ids, self.pad_token_id, attention_mask=attention_mask)
+
+        if isinstance(self.tokenizer, T5Tokenizer):
+            decoder_input_ids = self._shift_right_t5(labels)
+        else:
+            decoder_input_ids = shift_tokens_right(labels, self.pad_token_id)
+
+        batch = {
+            "input_ids": input_ids,
+            "attention_mask": attention_mask,
+            "decoder_input_ids": decoder_input_ids,
+            "labels": labels,
+        }
+        return batch
+
+    def _shift_right_t5(self, input_ids):
+        # shift inputs to the right
+        shifted_input_ids = input_ids.new_zeros(input_ids.shape)
+        shifted_input_ids[..., 1:] = input_ids[..., :-1].clone()
+        shifted_input_ids[..., 0] = self.pad_token_id
+        return shifted_input_ids
+
+    def _encode(self, batch) -> Dict[str, torch.Tensor]:
+        batch_encoding = self.tokenizer.prepare_seq2seq_batch(
+            [x["src_texts"] for x in batch],
+            tgt_texts=[x["tgt_texts"] for x in batch],
+            max_length=self.data_args.max_source_length,
+            max_target_length=self.data_args.max_target_length,
+            padding="max_length" if self.tpu_num_cores is not None else "longest",  # TPU hack
+            return_tensors="pt",
+            **self.dataset_kwargs,
+        )
+        return batch_encoding.data
+
+
 class SortishSampler(Sampler):
     "Go through the text data by order of src length with a bit of randomness. From fastai repo."
 
@@ -378,19 +467,63 @@ def get_git_info():
     return repo_infos
 
 
-ROUGE_KEYS = ["rouge1", "rouge2", "rougeL"]
+ROUGE_KEYS = ["rouge1", "rouge2", "rougeL", "rougeLsum"]
 
 
-def calculate_rouge(output_lns: List[str], reference_lns: List[str], use_stemmer=True) -> Dict:
-    scorer = rouge_scorer.RougeScorer(ROUGE_KEYS, use_stemmer=use_stemmer)
+def extract_rouge_mid_statistics(dct):
+    new_dict = {}
+    for k1, v1 in dct.items():
+        mid = v1.mid
+        new_dict[k1] = {stat: round(getattr(mid, stat), 4) for stat in ["precision", "recall", "fmeasure"]}
+    return new_dict
+
+
+def calculate_rouge(
+    pred_lns: List[str],
+    tgt_lns: List[str],
+    use_stemmer=True,
+    rouge_keys=ROUGE_KEYS,
+    return_precision_and_recall=False,
+    bootstrap_aggregation=True,
+    newline_sep=True,
+) -> Dict:
+    """Calculate rouge using rouge_scorer package.
+
+    Args:
+        pred_lns: list of summaries generated by model
+        tgt_lns: list of groundtruth summaries (e.g. contents of val.target)
+        use_stemmer:  Bool indicating whether Porter stemmer should be used to
+        strip word suffixes to improve matching.
+        rouge_keys:  which metrics to compute, defaults to rouge1, rouge2, rougeL, rougeLsum
+        return_precision_and_recall: (False) whether to also return precision and recall.
+        bootstrap_aggregation: whether to do the typical bootstrap resampling of scores. Defaults to True, if False
+            this function returns a collections.defaultdict[metric: list of values for each observation for each subscore]``
+        newline_sep:(default=True) whether to add newline between sentences. This is essential for calculation rougeL
+        on multi sentence summaries (CNN/DM dataset).
+
+    Returns:
+         Dict[score: value] if aggregate else defaultdict(list) keyed by rouge_keys
+
+    """
+    scorer = rouge_scorer.RougeScorer(rouge_keys, use_stemmer=use_stemmer)
     aggregator = scoring.BootstrapAggregator()
-
-    for reference_ln, output_ln in zip(reference_lns, output_lns):
-        scores = scorer.score(reference_ln, output_ln)
+    for pred, tgt in zip(tgt_lns, pred_lns):
+        # rougeLsum expects "\n" separated sentences within a summary
+        if newline_sep:
+            pred = add_newline_to_end_of_each_sentence(pred)
+            tgt = add_newline_to_end_of_each_sentence(tgt)
+        scores = scorer.score(pred, tgt)
         aggregator.add_scores(scores)
 
-    result = aggregator.aggregate()
-    return {k: round(v.mid.fmeasure * 100, 4) for k, v in result.items()}
+    if bootstrap_aggregation:
+        result = aggregator.aggregate()
+        if return_precision_and_recall:
+            return extract_rouge_mid_statistics(result)  # here we return dict
+        else:
+            return {k: round(v.mid.fmeasure * 100, 4) for k, v in result.items()}
+
+    else:
+        return aggregator._scores  # here we return defaultdict(list)
 
 
 # Utilities for freezing parameters and checking whether they are frozen
@@ -402,6 +535,25 @@ def freeze_params(model: nn.Module):
         par.requires_grad = False
 
 
+def freeze_embeds(model):
+    """Freeze token embeddings and positional embeddings for bart, just token embeddings for t5."""
+    model_type = model.config.model_type
+
+    if model_type == "t5":
+        freeze_params(model.shared)
+        for d in [model.encoder, model.decoder]:
+            freeze_params(d.embed_tokens)
+    elif model_type == "fsmt":
+        for d in [model.model.encoder, model.model.decoder]:
+            freeze_params(d.embed_positions)
+            freeze_params(d.embed_tokens)
+    else:
+        freeze_params(model.model.shared)
+        for d in [model.model.encoder, model.model.decoder]:
+            freeze_params(d.embed_positions)
+            freeze_params(d.embed_tokens)
+
+
 def grad_status(model: nn.Module) -> Iterable:
     return (par.requires_grad for par in model.parameters())
 
@@ -423,9 +575,6 @@ def assert_not_all_frozen(model):
     assert any(model_grads), f"none of {npars} weights require grad"
 
 
-# CLI Parsing utils
-
-
 def parse_numeric_n_bool_cl_kwargs(unparsed_args: List[str]) -> Dict[str, Union[int, float, bool]]:
     """
     Parse an argv list of unspecified command line args to a dict.
@@ -456,3 +605,9 @@ def write_txt_file(ordered_tgt, path):
     for ln in ordered_tgt:
         f.write(ln + "\n")
         f.flush()
+
+
+def chunks(lst, n):
+    """Yield successive n-sized chunks from lst."""
+    for i in range(0, len(lst), n):
+        yield lst[i : i + n]

examples/seq2seq/xla_spawn.py

@@ -0,0 +1,72 @@
+"""
+A simple launcher script for TPU training
+
+Inspired by https://github.com/pytorch/pytorch/blob/master/torch/distributed/launch.py
+
+::
+    >>> python xla_spawn.py --num_cores=NUM_CORES_YOU_HAVE
+               YOUR_TRAINING_SCRIPT.py (--arg1 --arg2 --arg3 and all other
+               arguments of your training script)
+
+"""
+
+
+import importlib
+import sys
+from argparse import REMAINDER, ArgumentParser
+from pathlib import Path
+
+import torch_xla.distributed.xla_multiprocessing as xmp
+
+
+def parse_args():
+    """
+    Helper function parsing the command line options
+    @retval ArgumentParser
+    """
+    parser = ArgumentParser(
+        description=(
+            "PyTorch TPU distributed training launch "
+            "helper utility that will spawn up "
+            "multiple distributed processes"
+        )
+    )
+
+    # Optional arguments for the launch helper
+    parser.add_argument("--num_cores", type=int, default=1, help="Number of TPU cores to use (1 or 8).")
+
+    # positional
+    parser.add_argument(
+        "training_script",
+        type=str,
+        help=(
+            "The full path to the single TPU training "
+            "program/script to be launched in parallel, "
+            "followed by all the arguments for the "
+            "training script"
+        ),
+    )
+
+    # rest from the training program
+    parser.add_argument("training_script_args", nargs=REMAINDER)
+
+    return parser.parse_args()
+
+
+def main():
+    args = parse_args()
+
+    # Import training_script as a module.
+    script_fpath = Path(args.training_script)
+    sys.path.append(str(script_fpath.parent.resolve()))
+    mod_name = script_fpath.stem
+    mod = importlib.import_module(mod_name)
+
+    # Patch sys.argv
+    sys.argv = [args.training_script] + args.training_script_args + ["--tpu_num_cores", str(args.num_cores)]
+
+    xmp.spawn(mod._mp_fn, args=(), nprocs=args.num_cores)
+
+
+if __name__ == "__main__":
+    main()

examples/text-classification/run_tf_text_classification.py

@@ -96,6 +96,9 @@ def get_tfds(
         else None
     )
 
+    if train_ds is not None:
+        train_ds = train_ds.apply(tf.data.experimental.assert_cardinality(len(ds[datasets.Split.TRAIN])))
+
     val_ds = (
         tf.data.Dataset.from_generator(
             gen_val,
@@ -106,6 +109,9 @@ def get_tfds(
         else None
     )
 
+    if val_ds is not None:
+        val_ds = val_ds.apply(tf.data.experimental.assert_cardinality(len(ds[datasets.Split.VALIDATION])))
+
     test_ds = (
         tf.data.Dataset.from_generator(
             gen_test,
@@ -116,6 +122,9 @@ def get_tfds(
         else None
     )
 
+    if test_ds is not None:
+        test_ds = test_ds.apply(tf.data.experimental.assert_cardinality(len(ds[datasets.Split.TEST])))
+
     return train_ds, val_ds, test_ds, label2id
 
 

model_cards/Rostlab/prot_t5_xl_bfd/README.md

@@ -0,0 +1,125 @@
+---
+language: protein
+tags:
+- protein language model
+datasets:
+- BFD
+---
+
+# ProtT5-XL-BFD model
+
+Pretrained model on protein sequences using a masked language modeling (MLM) objective. It was introduced in
+[this paper](https://doi.org/10.1101/2020.07.12.199554) and first released in
+[this repository](https://github.com/agemagician/ProtTrans). This model is trained on uppercase amino acids: it only works with capital letter amino acids.
+
+
+## Model description
+
+ProtT5-XL-BFD is based on the `t5-3b` model and was pretrained on a large corpus of protein sequences in a self-supervised fashion.
+This means it was pretrained on the raw protein sequences only, with no humans labelling them in any way (which is why it can use lots of
+publicly available data) with an automatic process to generate inputs and labels from those protein sequences.
+
+One important difference between this T5 model and the original T5 version is the denosing objective.
+The original T5-3B model was pretrained using a span denosing objective, while this model was pre-trained with a Bart-like MLM denosing objective.
+The masking probability is consistent with the original T5 training by randomly masking 15% of the amino acids in the input.
+
+It has been shown that the features extracted from this self-supervised model (LM-embeddings) captured important biophysical properties governing protein shape.
+shape.
+This implied learning some of the grammar of the language of life realized in protein sequences.
+
+## Intended uses & limitations
+
+The model could be used for protein feature extraction or to be fine-tuned on downstream tasks.
+We have noticed in some tasks on can gain more accuracy by fine-tuning the model rather than using it as a feature extractor.
+We have also noticed that for feature extraction, its better to use the feature extracted from the encoder not from the decoder.
+
+### How to use
+
+Here is how to use this model to extract the features of a given protein sequence in PyTorch:
+
+```python
+from transformers import T5Tokenizer, T5Model
+import re
+import torch
+
+tokenizer = T5Tokenizer.from_pretrained('Rostlab/prot_t5_xl_bfd', do_lower_case=False)
+
+model = T5Model.from_pretrained("Rostlab/prot_t5_xl_bfd")
+
+sequences_Example = ["A E T C Z A O","S K T Z P"]
+
+sequences_Example = [re.sub(r"[UZOB]", "X", sequence) for sequence in sequences_Example]
+
+ids = tokenizer.batch_encode_plus(sequences_Example, add_special_tokens=True, padding=True)
+
+input_ids = torch.tensor(ids['input_ids'])
+attention_mask = torch.tensor(ids['attention_mask'])
+
+with torch.no_grad():
+    embedding = model(input_ids=input_ids,attention_mask=attention_mask,decoder_input_ids=None)
+
+# For feature extraction we recommend to use the encoder embedding
+encoder_embedding = embedding[2].cpu().numpy()
+decoder_embedding = embedding[0].cpu().numpy()
+```
+
+## Training data
+
+The ProtT5-XL-BFD model was pretrained on [BFD](https://bfd.mmseqs.com/), a dataset consisting of 2.1 billion protein sequences.
+
+## Training procedure
+
+### Preprocessing
+
+The protein sequences are uppercased and tokenized using a single space and a vocabulary size of 21. The rare amino acids "U,Z,O,B" were mapped to "X".
+The inputs of the model are then of the form:
+
+```
+Protein Sequence [EOS]
+```
+
+The preprocessing step was performed on the fly, by cutting and padding the protein sequences up to 512 tokens.
+
+The details of the masking procedure for each sequence are as follows:
+- 15% of the amino acids are masked.
+- In 90% of the cases, the masked amino acids are replaced by `[MASK]` token.
+- In 10% of the cases, the masked amino acids are replaced by a random amino acid (different) from the one they replace.
+
+### Pretraining
+
+The model was trained on a single TPU Pod V3-1024 for 1.2 million steps in total, using sequence length 512 (batch size 4k).
+It has a total of approximately 3B parameters and was trained using the encoder-decoder architecture.
+The optimizer used is AdaFactor with inverse square root learning rate schedule for pre-training.
+
+
+## Evaluation results
+
+When the model is used for feature etraction, this model achieves the following results:
+
+Test results :
+
+| Task/Dataset | secondary structure (3-states) | secondary structure (8-states)  |  Localization | Membrane  |
+|:-----:|:-----:|:-----:|:-----:|:-----:|
+|   CASP12  | 77 | 66 |    |    |
+|   TS115   | 85 | 74 |    |    | 
+|   CB513   | 84 | 71 |    |    |
+|  DeepLoc  |    |    | 77 | 91 |
+
+### BibTeX entry and citation info
+
+```bibtex
+@article {Elnaggar2020.07.12.199554,
+	author = {Elnaggar, Ahmed and Heinzinger, Michael and Dallago, Christian and Rehawi, Ghalia and Wang, Yu and Jones, Llion and Gibbs, Tom and Feher, Tamas and Angerer, Christoph and Steinegger, Martin and BHOWMIK, DEBSINDHU and Rost, Burkhard},
+	title = {ProtTrans: Towards Cracking the Language of Life{\textquoteright}s Code Through Self-Supervised Deep Learning and High Performance Computing},
+	elocation-id = {2020.07.12.199554},
+	year = {2020},
+	doi = {10.1101/2020.07.12.199554},
+	publisher = {Cold Spring Harbor Laboratory},
+	abstract = {Computational biology and bioinformatics provide vast data gold-mines from protein sequences, ideal for Language Models (LMs) taken from Natural Language Processing (NLP). These LMs reach for new prediction frontiers at low inference costs. Here, we trained two auto-regressive language models (Transformer-XL, XLNet) and two auto-encoder models (Bert, Albert) on data from UniRef and BFD containing up to 393 billion amino acids (words) from 2.1 billion protein sequences (22- and 112 times the entire English Wikipedia). The LMs were trained on the Summit supercomputer at Oak Ridge National Laboratory (ORNL), using 936 nodes (total 5616 GPUs) and one TPU Pod (V3-512 or V3-1024). We validated the advantage of up-scaling LMs to larger models supported by bigger data by predicting secondary structure (3-states: Q3=76-84, 8 states: Q8=65-73), sub-cellular localization for 10 cellular compartments (Q10=74) and whether a protein is membrane-bound or water-soluble (Q2=89). Dimensionality reduction revealed that the LM-embeddings from unlabeled data (only protein sequences) captured important biophysical properties governing protein shape. This implied learning some of the grammar of the language of life realized in protein sequences. The successful up-scaling of protein LMs through HPC to larger data sets slightly reduced the gap between models trained on evolutionary information and LMs. Availability ProtTrans: \<a href="https://github.com/agemagician/ProtTrans"\>https://github.com/agemagician/ProtTrans\</a\>Competing Interest StatementThe authors have declared no competing interest.},
+	URL = {https://www.biorxiv.org/content/early/2020/07/21/2020.07.12.199554},
+	eprint = {https://www.biorxiv.org/content/early/2020/07/21/2020.07.12.199554.full.pdf},
+	journal = {bioRxiv}
+}
+```
+
+> Created by [Ahmed Elnaggar/@Elnaggar_AI](https://twitter.com/Elnaggar_AI) | [LinkedIn](https://www.linkedin.com/in/prof-ahmed-elnaggar/)

model_cards/TypicaAI/magbert-ner/README.md

@@ -0,0 +1,55 @@
+---
+language: fr
+widget:
+- text: "Je m'appelle Hicham et je vis a Fès"
+---
+
+# MagBERT-NER: a state-of-the-art NER model for Moroccan French language (Maghreb)
+
+## Introduction
+
+[MagBERT-NER] is a state-of-the-art NER model for Moroccan French language (Maghreb). The MagBERT-NER model was fine-tuned for NER Task based the language model for French Camembert (based on the RoBERTa architecture).
+
+For further information or requests, please go to [Typica.AI Website](https://typicasoft.io/)
+
+## How to use MagBERT-NER with HuggingFace
+
+##### Load MagBERT-NER and its sub-word tokenizer :
+```python
+from transformers import AutoTokenizer, AutoModelForTokenClassification
+
+tokenizer = AutoTokenizer.from_pretrained("TypicaAI/magbert-ner")
+model = AutoModelForTokenClassification.from_pretrained("TypicaAI/magbert-ner")
+
+
+##### Process text sample (from wikipedia about the current Prime Minister of Morocco) Using NER pipeline  
+
+from transformers import pipeline
+
+nlp = pipeline('ner', model=model, tokenizer=tokenizer, grouped_entities=True)
+nlp("Saad Dine El Otmani, né le 16 janvier 1956 à Inezgane, est un homme d'État marocain, chef du gouvernement du Maroc depuis le 5 avril 2017")
+
+
+#[{'entity_group': 'I-PERSON',
+#  'score': 0.8941445276141167,
+#  'word': 'Saad Dine El Otmani'},
+# {'entity_group': 'B-DATE',
+#  'score': 0.5967703461647034,
+#  'word': '16 janvier 1956'},
+# {'entity_group': 'B-GPE', 'score': 0.7160899192094803, 'word': 'Inezgane'},
+# {'entity_group': 'B-NORP', 'score': 0.7971733212471008, 'word': 'marocain'},
+# {'entity_group': 'B-GPE', 'score': 0.8921478390693665, 'word': 'Maroc'},
+# {'entity_group': 'B-DATE',
+#  'score': 0.5760444005330404,
+#  'word': '5 avril 2017'}]
+
+```
+
+```
+
+
+## Authors 
+
+MagBert-NER was trained and evaluated by Hicham Assoudi, Ph.D.
+
+

model_cards/abhilash1910/french-roberta/README.md

@@ -0,0 +1,131 @@
+# Roberta Trained Model For Masked Language Model On French Corpus :robot:
+
+
+This is a Masked Language Model trained with [Roberta](https://huggingface.co/transformers/model_doc/roberta.html) on a small French News Corpus(Leipzig corpora).
+The model is built using Huggingface transformers.
+The model can be found at :[French-Roberta](https://huggingface.co/abhilash1910/french-roberta)
+
+
+## Specifications
+
+
+The corpus for training is taken from Leipzig Corpora (French News) , and is trained on a small set of the corpus (300K). 
+
+
+## Model Specification
+
+
+The model chosen for training is [Roberta](https://arxiv.org/abs/1907.11692) with the following specifications:
+ 1. vocab_size=32000
+ 2. max_position_embeddings=514
+ 3. num_attention_heads=12
+ 4. num_hidden_layers=6
+ 5. type_vocab_size=1
+
+
+This is trained by using  RobertaConfig from transformers package.The total training parameters :68124416
+The model is trained for 100 epochs with a gpu batch size of 64 units. 
+More details for building custom models can be found at the [HuggingFace Blog](https://huggingface.co/blog/how-to-train)
+
+
+
+## Usage Specifications
+
+
+For using this model, we have to first import AutoTokenizer and AutoModelWithLMHead Modules from transformers
+After that we have to specify, the pre-trained model,which in this case is 'abhilash1910/french-roberta' for the tokenizers and the model.
+
+
+```python
+from transformers import AutoTokenizer, AutoModelWithLMHead
+
+tokenizer = AutoTokenizer.from_pretrained("abhilash1910/french-roberta")
+
+model = AutoModelWithLMHead.from_pretrained("abhilash1910/french-roberta")
+```
+
+
+After this the model will be downloaded, it will take some time to download all the model files.
+For testing the model, we have to import  pipeline module from transformers and create a masked output model for inference as follows:
+
+
+```python
+from transformers import pipeline
+model_mask = pipeline('fill-mask', model='abhilash1910/french-roberta')
+model_mask("Le tweet <mask>.")
+```
+
+
+Some of the examples are also provided with generic French sentences:
+
+Example 1:
+
+
+```python
+model_mask("À ce jour, <mask> projet a entraîné")
+```
+
+
+Output:
+
+
+```bash
+[{'sequence': '<s>À ce jour, belles projet a entraîné</s>',
+  'score': 0.18685665726661682,
+  'token': 6504,
+  'token_str': 'Ġbelles'},
+ {'sequence': '<s>À ce jour,- projet a entraîné</s>',
+  'score': 0.0005200508167035878,
+  'token': 17,
+  'token_str': '-'},
+ {'sequence': '<s>À ce jour, de projet a entraîné</s>',
+  'score': 0.00045729897101409733,
+  'token': 268,
+  'token_str': 'Ġde'},
+ {'sequence': '<s>À ce jour, du projet a entraîné</s>',
+  'score': 0.0004307595663703978,
+  'token': 326,
+  'token_str': 'Ġdu'},
+ {'sequence': '<s>À ce jour," projet a entraîné</s>',
+  'score': 0.0004219160182401538,
+  'token': 6,
+  'token_str': '"'}]
+  ```
+ 
+ Example 2:
+ 
+```python
+ model_mask("C'est un <mask>")
+```
+
+Output:
+
+```bash
+[{'sequence': "<s>C'est un belles</s>",
+  'score': 0.16440927982330322,
+  'token': 6504,
+  'token_str': 'Ġbelles'},
+ {'sequence': "<s>C'est un de</s>",
+  'score': 0.0005495127406902611,
+  'token': 268,
+  'token_str': 'Ġde'},
+ {'sequence': "<s>C'est un du</s>",
+  'score': 0.00044988933950662613,
+  'token': 326,
+  'token_str': 'Ġdu'},
+ {'sequence': "<s>C'est un-</s>",
+  'score': 0.00044542422983795404,
+  'token': 17,
+  'token_str': '-'},
+ {'sequence': "<s>C'est un\t</s>",
+  'score': 0.00037563967634923756,
+  'token': 202,
+  'token_str': 'ĉ'}]
+  ```
+  
+
+## Resources
+
+For all resources , please look into the [HuggingFace](https://huggingface.co/) Site and the [Repositories](https://github.com/huggingface).
+
+

model_cards/adalbertojunior/PTT5-SMALL-SUM/README.md

@@ -0,0 +1,37 @@
+---
+language: pt
+---
+
+# PTT5-SMALL-SUM
+
+## Model description
+
+This model was trained to summarize texts in portuguese
+
+
+based on ```unicamp-dl/ptt5-small-portuguese-vocab```
+
+#### How to use
+
+```python
+from transformers import T5Tokenizer, T5ForConditionalGeneration
+
+tokenizer = T5Tokenizer.from_pretrained('adalbertojunior/PTT5-SMALL-SUM')
+
+t5 = T5ForConditionalGeneration.from_pretrained('adalbertojunior/PTT5-SMALL-SUM')
+
+text="Esse é um exemplo de sumarização."
+
+input_ids = tokenizer.encode(text, return_tensors="pt", add_special_tokens=True)
+
+generated_ids = t5.generate(
+        input_ids=input_ids,
+        num_beams=1,
+        max_length=40,
+        #repetition_penalty=2.5
+    ).squeeze()
+    
+predicted_span = tokenizer.decode(generated_ids, skip_special_tokens=True, clean_up_tokenization_spaces=True)
+
+
+```

model_cards/ahotrod/albert_xxlargev1_squad2_512/README.md

@@ -1,71 +1,60 @@
 ## Albert xxlarge version 1 language model fine-tuned on SQuAD2.0
 
-### with the following results:
+###  (updated 30Sept2020) with the following results:
 
 ```
-exact: 85.65653162637918
-f1: 89.260458954177
+exact: 86.11134506864315
+f1: 89.35371214945009
 total': 11873
-HasAns_exact': 82.6417004048583
-HasAns_f1': 89.8598902096736
+HasAns_exact': 83.56950067476383
+HasAns_f1': 90.06353312254078
 HasAns_total': 5928
-NoAns_exact': 88.66274179983179
-NoAns_f1': 88.66274179983179
+NoAns_exact': 88.64592094196804
+NoAns_f1': 88.64592094196804
 NoAns_total': 5945
-best_exact': 85.65653162637918
+best_exact': 86.11134506864315
 best_exact_thresh': 0.0
-best_f1': 89.2604589541768
+best_f1': 89.35371214944985
 best_f1_thresh': 0.0
 ```
 
 ### from script:
 
 ```
-python -m torch.distributed.launch --nproc_per_node=2 ${RUN_SQUAD_DIR}/run_squad.py \
---model_type albert \
---model_name_or_path albert-xxlarge-v1 \
---do_train \
---train_file ${SQUAD_DIR}/train-v2.0.json \
---predict_file ${SQUAD_DIR}/dev-v2.0.json \
---version_2_with_negative \
---num_train_epochs 3 \
---max_steps 8144 \
---warmup_steps 814 \
---do_lower_case \
---learning_rate 3e-5 \
---max_seq_length 512 \
---doc_stride 128 \
---save_steps 2000 \
---per_gpu_train_batch_size 1 \
---gradient_accumulation_steps 24 \
---output_dir ${MODEL_PATH}
-
-CUDA_VISIBLE_DEVICES=0 python ${RUN_SQUAD_DIR}/run_squad.py \
---model_type albert \
---model_name_or_path ${MODEL_PATH} \
---do_eval \
---train_file ${SQUAD_DIR}/train-v2.0.json \
---predict_file ${SQUAD_DIR}/dev-v2.0.json \
---version_2_with_negative \
---do_lower_case \
---max_seq_length 512 \
---per_gpu_eval_batch_size 48 \
---output_dir ${MODEL_PATH}
+python ${EXAMPLES}/run_squad.py \
+  --model_type albert \
+  --model_name_or_path albert-xxlarge-v1 \
+  --do_train \
+  --do_eval \
+  --train_file ${SQUAD}/train-v2.0.json \
+  --predict_file ${SQUAD}/dev-v2.0.json \
+  --version_2_with_negative \
+  --do_lower_case \
+  --num_train_epochs 3 \
+  --max_steps 8144 \
+  --warmup_steps 814 \
+  --learning_rate 3e-5 \
+  --max_seq_length 512 \
+  --doc_stride 128 \
+  --per_gpu_train_batch_size 6 \
+  --gradient_accumulation_steps 8 \
+  --per_gpu_eval_batch_size 48 \
+  --fp16 \
+  --fp16_opt_level O1 \
+  --threads 12 \
+  --logging_steps 50 \
+  --save_steps 3000 \
+  --overwrite_output_dir \
+  --output_dir ${MODEL_PATH}
 ```
 
-### using the following system & software:
+### using the following software & system:
 
 ```
-OS/Platform: Linux-4.15.0-76-generic-x86_64-with-debian-buster-sid
-GPU/CPU: 2 x NVIDIA 1080Ti / Intel i7-8700
-Transformers: 2.3.0
-PyTorch: 1.4.0
-TensorFlow: 2.1.0
-Python: 3.7.6
+Transformers: 3.1.0
+PyTorch: 1.6.0
+TensorFlow: 2.3.1
+Python: 3.8.1
+OS: Linux-5.4.0-48-generic-x86_64-with-glibc2.10
+CPU/GPU: Intel i9-9900K / NVIDIA Titan RTX 24GB
 ```
-
-### Access this albert_xxlargev1_sqd2_512 fine-tuned model with:
-
-```python
-tokenizer = AutoTokenizer.from_pretrained("ahotrod/albert_xxlargev1_squad2_512")
-model = AutoModelForQuestionAnswering.from_pretrained("ahotrod/albert_xxlargev1_squad2_512")

model_cards/akhooli/personachat-arabic/README.md

@@ -0,0 +1,12 @@
+---
+tags:
+- conversational
+language:
+- ar
+license: mit
+---
+## personachat-arabic (conversational AI)
+This is personachat-arabic, using a subset from the persona-chat validation dataset, machine translated to Arabic (from English) 
+and fine-tuned from [akhooli/gpt2-small-arabic](https://huggingface.co/akhooli/gpt2-small-arabic) which is a limited text generation model.  
+Usage: see the last section of this [example notebook](https://colab.research.google.com/drive/1I6RFOWMaTpPBX7saJYjnSTddW0TD6H1t?usp=sharing) 
+Note: model has limited training set which was machine translated (do not use for production). 

model_cards/akhooli/xlm-r-large-arabic-toxic/README.md

@@ -0,0 +1,12 @@
+---
+
+language:
+- ar
+- en
+
+license: mit
+---
+### xlm-r-large-arabic-toxic (toxic/hate speech classifier) 
+Toxic (hate speech) classification (Label_0: non-toxic, Label_1: toxic) of Arabic comments by fine-tuning XLM-Roberta-Large. 
+Zero shot classification of other languages (also works in mixed languages - ex. Arabic & English).  
+Usage and further info: see last section in this [Colab notebook](https://lnkd.in/d3bCFyZ)

model_cards/allenyummy/chinese-bert-wwm-ehr-ner-sl/README.md

@@ -0,0 +1,15 @@
+---
+language: zh-tw
+---
+
+# Model name
+Chinese-bert-wwm-electrical-health-record-ner-sequence-labeling
+
+
+#### How to use
+
+```
+from transformers import AutoTokenizer, AutoModelForTokenClassification  
+tokenizer = AutoTokenizer.from_pretrained("chinese-bert-wwm-ehr-ner-sl")  
+model = AutoModelForTokenClassification.from_pretrained("chinese-bert-wwm-ehr-ner-sl") 
+```

model_cards/amine/bert-base-5lang-cased/README.md

@@ -0,0 +1,64 @@
+---
+language: 
+- en
+- fr
+- es
+- de
+- zh
+
+tags:
+- pytorch
+- bert
+- multilingual
+- en
+- fr
+- es
+- de
+- zh
+
+datasets: wikipedia
+
+license: apache-2.0
+
+inference: false
+---
+
+# bert-base-5lang-cased
+This is a smaller version of [bert-base-multilingual-cased](https://huggingface.co/bert-base-multilingual-cased) that handles only 5 languages (en, fr, es, de and zh) instead of 104.
+The model is therefore 30% smaller than the original one (124M parameters instead of 178M) but gives exactly the same representations for the above cited languages. 
+Starting from `bert-base-5lang-cased` will facilitate the deployment of your model on public cloud platforms while keeping similar results. 
+For instance, Google Cloud Platform requires that the model size on disk should be lower than 500 MB for serveless deployments (Cloud Functions / Cloud ML) which is not the case of the original `bert-base-multilingual-cased`.
+
+For more information about the models size, memory footprint and loading time please refer to the table below:
+
+|            Model             | Num parameters |   Size   |  Memory  | Loading time |
+| ---------------------------- | -------------- | -------- | -------- | ------------ |
+| bert-base-multilingual-cased |   178 million  |  714 MB  | 1400 MB  |    4.2 sec   |
+| bert-base-5lang-cased        |   124 million  |  495 MB  |  950 MB  |    3.6 sec   |
+
+These measurements have been computed on a [Google Cloud n1-standard-1 machine (1 vCPU, 3.75 GB)](https://cloud.google.com/compute/docs/machine-types\#n1_machine_type).
+
+## How to use
+
+```python
+from transformers import AutoTokenizer, AutoModel
+
+tokenizer = AutoTokenizer.from_pretrained("amine/bert-base-5lang-cased")
+model = AutoModel.from_pretrained("amine/bert-base-5lang-cased")
+
+```
+
+### How to cite
+
+```bibtex
+@inproceedings{smallermbert,
+  title={Load What You Need: Smaller Versions of Mutlilingual BERT},
+  author={Abdaoui, Amine and Pradel, Camille and Sigel, Grégoire},
+  booktitle={SustaiNLP / EMNLP},
+  year={2020}
+}
+```
+
+## Contact 
+
+Please contact amine@geotrend.fr for any question, feedback or request.

model_cards/bayartsogt/bert-base-mongolian-cased/README.md

@@ -0,0 +1,60 @@
+---
+language: "mn"
+tags:
+- mongolian
+- cased
+---
+
+# BERT-BASE-MONGOLIAN-CASED
+[Link to Official Mongolian-BERT repo](https://github.com/tugstugi/mongolian-bert)
+
+## Model description
+This repository contains pre-trained Mongolian [BERT](https://arxiv.org/abs/1810.04805) models trained by [tugstugi](https://github.com/tugstugi), [enod](https://github.com/enod) and [sharavsambuu](https://github.com/sharavsambuu).
+Special thanks to [nabar](https://github.com/nabar) who provided 5x TPUs.
+
+This repository is based on the following open source projects: [google-research/bert](https://github.com/google-research/bert/),
+[huggingface/pytorch-pretrained-BERT](https://github.com/huggingface/pytorch-pretrained-BERT) and [yoheikikuta/bert-japanese](https://github.com/yoheikikuta/bert-japanese).
+
+#### How to use
+
+```python
+from transformers import pipeline, AlbertTokenizer, BertForMaskedLM
+
+tokenizer = AlbertTokenizer.from_pretrained('bayartsogt/bert-base-mongolian-cased')
+model = BertForMaskedLM.from_pretrained('bayartsogt/bert-base-mongolian-cased')
+
+## declare task ##
+pipe = pipeline(task="fill-mask", model=model, tokenizer=tokenizer)
+
+## example ##
+input_  = 'Миний [MASK] хоол идэх нь тун чухал.'
+
+output_ = pipe(input_)
+for i in range(len(output_)):
+    print(output_[i])
+    
+## Output ##
+# {'sequence': '[CLS] Миний хувьд хоол идэх нь тун чухал.[SEP]', 'score': 0.8734784722328186, 'token': 95, 'token_str': '▁хувьд'}
+# {'sequence': '[CLS] Миний бодлоор хоол идэх нь тун чухал.[SEP]', 'score': 0.09788835793733597, 'token': 6320, 'token_str': '▁бодлоор'}
+# {'sequence': '[CLS] Миний хүү хоол идэх нь тун чухал.[SEP]', 'score': 0.0027510314248502254, 'token': 590, 'token_str': '▁хүү'}
+# {'sequence': '[CLS] Миний бие хоол идэх нь тун чухал.[SEP]', 'score': 0.0014857524074614048, 'token': 267, 'token_str': '▁бие'}
+# {'sequence': '[CLS] Миний охин хоол идэх нь тун чухал.[SEP]', 'score': 0.0013575413031503558, 'token': 1116, 'token_str': '▁охин'}
+
+```
+
+
+## Training data
+Mongolian Wikipedia and the 700 million word Mongolian news data set  [[Pretraining Procedure](https://github.com/tugstugi/mongolian-bert#pre-training)]
+
+### BibTeX entry and citation info
+
+```bibtex
+@misc{mongolian-bert,
+  author = {Tuguldur, Erdene-Ochir and Gunchinish, Sharavsambuu and Bataa, Enkhbold},
+  title = {BERT Pretrained Models on Mongolian Datasets},
+  year = {2019},
+  publisher = {GitHub},
+  journal = {GitHub repository},
+  howpublished = {\url{https://github.com/tugstugi/mongolian-bert/}}
+}
+```

model_cards/bayartsogt/bert-base-mongolian-uncased/README.md

@@ -0,0 +1,54 @@
+---
+language: "mn"
+tags:
+- bert
+- mongolian
+- uncased
+---
+
+# BERT-BASE-MONGOLIAN-UNCASED
+[Link to Official Mongolian-BERT repo](https://github.com/tugstugi/mongolian-bert)
+
+## Model description
+This repository contains pre-trained Mongolian [BERT](https://arxiv.org/abs/1810.04805) models trained by [tugstugi](https://github.com/tugstugi), [enod](https://github.com/enod) and [sharavsambuu](https://github.com/sharavsambuu).
+Special thanks to [nabar](https://github.com/nabar) who provided 5x TPUs.
+
+This repository is based on the following open source projects: [google-research/bert](https://github.com/google-research/bert/),
+[huggingface/pytorch-pretrained-BERT](https://github.com/huggingface/pytorch-pretrained-BERT) and [yoheikikuta/bert-japanese](https://github.com/yoheikikuta/bert-japanese).
+
+#### How to use
+
+```python
+from transformers import pipeline, AlbertTokenizer, BertForMaskedLM
+
+tokenizer = AlbertTokenizer.from_pretrained('bayartsogt/bert-base-mongolian-uncased')
+model = BertForMaskedLM.from_pretrained('bayartsogt/bert-base-mongolian-uncased')
+
+## declare task ##
+pipe = pipeline(task="fill-mask", model=model, tokenizer=tokenizer)
+
+## example ##
+input_  = 'Миний [MASK] хоол идэх нь тун чухал.'
+
+output_ = pipe(input_)
+for i in range(len(output_)):
+    print(output_[i])
+
+```
+
+
+## Training data
+Mongolian Wikipedia and the 700 million word Mongolian news data set  [[Pretraining Procedure](https://github.com/tugstugi/mongolian-bert#pre-training)]
+
+### BibTeX entry and citation info
+
+```bibtex
+@misc{mongolian-bert,
+  author = {Tuguldur, Erdene-Ochir and Gunchinish, Sharavsambuu and Bataa, Enkhbold},
+  title = {BERT Pretrained Models on Mongolian Datasets},
+  year = {2019},
+  publisher = {GitHub},
+  journal = {GitHub repository},
+  howpublished = {\url{https://github.com/tugstugi/mongolian-bert/}}
+}
+```

model_cards/cedpsam/chatbot_fr/README.md

@@ -13,6 +13,9 @@ trained with this notebook
 https://colab.research.google.com/drive/1pfCV3bngAmISNZVfDvBMyEhQKuYw37Rl#scrollTo=AyImj9qZYLRi&uniqifier=3
 
 config from microsoft/DialoGPT-medium
+dataset generated from 2018 opensubtitle from opus folowing these guidelines
+https://github.com/PolyAI-LDN/conversational-datasets/tree/master/opensubtitles with this notebook
+https://colab.research.google.com/drive/1uyh3vJ9nEjqOHI68VD73qxt4olJzODxi#scrollTo=deaacv4XfLMk
 ### How to use
 
 Now we are ready to try out how the model works as a chatting partner!

model_cards/cimm-kzn/rudr-bert/README.md

@@ -8,16 +8,22 @@ RuDR-BERT - Multilingual, Cased, which pretrained on the raw part of the RuDReC
 
 If you find this repository helpful, feel free to cite our publication:
 
-[1] https://arxiv.org/abs/2004.03659
+[1] Tutubalina E, Alimova I, Miftahutdinov Z, et al. The Russian Drug Reaction Corpus and Neural Models for Drug Reactions and Effectiveness Detection in User Reviews. 
+   
+   preprint: https://arxiv.org/abs/2004.03659
 ```
-@misc{tutubalina2020russian,
-    title={The Russian Drug Reaction Corpus and Neural Models for Drug Reactions and Effectiveness Detection in User Reviews},
-    author={Elena Tutubalina and Ilseyar Alimova and Zulfat Miftahutdinov and Andrey Sakhovskiy and Valentin Malykh and Sergey Nikolenko},
-    year={2020},
-    eprint={2004.03659},
-    archivePrefix={arXiv},
-    primaryClass={cs.CL}
-}
+@article{10.1093/bioinformatics/btaa675,
+    author = {Tutubalina, Elena and Alimova, Ilseyar and Miftahutdinov, Zulfat and Sakhovskiy, Andrey and Malykh, Valentin and Nikolenko, Sergey},
+    title = "{The Russian Drug Reaction Corpus and Neural Models for Drug Reactions and Effectiveness Detection in User Reviews}",
+    journal = {Bioinformatics},
+    year = {2020},
+    month = {07},
+    issn = {1367-4803},
+    doi = {10.1093/bioinformatics/btaa675},
+    url = {https://doi.org/10.1093/bioinformatics/btaa675},
+    note = {btaa675},
+    eprint = {https://academic.oup.com/bioinformatics/advance-article-pdf/doi/10.1093/bioinformatics/btaa675/33539752/btaa675.pdf},
+} 
 ```
 [2] Tutubalina, EV and Miftahutdinov, Z Sh and Nugmanov, RI and Madzhidov, TI and Nikolenko, SI and Alimova, IS and Tropsha, AE Using semantic analysis of texts for the identification of drugs with similar therapeutic effects.
    [link to paper](https://www.researchgate.net/profile/Elena_Tutubalina/publication/323751823_Using_semantic_analysis_of_texts_for_the_identification_of_drugs_with_similar_therapeutic_effects/links/5bf7cfc3299bf1a0202cbc1f/Using-semantic-analysis-of-texts-for-the-identification-of-drugs-with-similar-therapeutic-effects.pdf)

model_cards/digitalepidemiologylab/covid-twitter-bert/README.md

@@ -1,5 +1,18 @@
-# COVID-Twitter-BERT (CT-BERT)
-BERT-large-uncased model, pretrained on a corpus of messages from Twitter about COVID-19
+---
+language: "en"
+thumbnail: "https://raw.githubusercontent.com/digitalepidemiologylab/covid-twitter-bert/master/images/COVID-Twitter-BERT_small.png"
+tags:
+- Twitter
+- COVID-19
+license: "MIT"
+---
+
+# COVID-Twitter-BERT (CT-BERT) v1
+
+:warning: _You may want to use the [v2 model](https://huggingface.co/digitalepidemiologylab/covid-twitter-bert-v2) which was trained on more recent data and yields better performance_ :warning: 
+
+
+BERT-large-uncased model, pretrained on a corpus of messages from Twitter about COVID-19. Find more info on our [GitHub page](https://github.com/digitalepidemiologylab/covid-twitter-bert).
 
 ## Overview
 This model was trained on 160M tweets collected between January 12 and April 16, 2020 containing at least one of the keywords "wuhan", "ncov", "coronavirus", "covid", or "sars-cov-2". These tweets were filtered and preprocessed to reach a final sample of 22.5M tweets (containing 40.7M sentences and 633M tokens) which were used for training.
@@ -14,5 +27,25 @@ tokenizer = AutoTokenizer.from_pretrained("digitalepidemiologylab/covid-twitter-
 model = AutoModel.from_pretrained("digitalepidemiologylab/covid-twitter-bert")
 ```
 
+You can also use the model with the `pipeline` interface:
+
+```python
+from transformers import pipeline
+import json
+
+pipe = pipeline(task='fill-mask', model='digitalepidemiologylab/covid-twitter-bert-v2')
+out = pipe(f"In places with a lot of people, it's a good idea to wear a {pipe.tokenizer.mask_token}")
+print(json.dumps(out, indent=4))
+[
+    {   
+        "sequence": "[CLS] in places with a lot of people, it's a good idea to wear a mask [SEP]",
+        "score": 0.9959408044815063,
+        "token": 7308,
+        "token_str": "mask"
+    },  
+    ... 
+]
+```
+
 ## References
 [1] Martin Müller, Marcel Salaté, Per E Kummervold. "COVID-Twitter-BERT: A Natural Language Processing Model to Analyse COVID-19 Content on Twitter" arXiv preprint arXiv:2005.07503 (2020).

model_cards/distilbert-base-german-cased-README.md

@@ -0,0 +1,4 @@
+---
+language: de
+---
+## distilbert-base-german-cased

model_cards/facebook/rag-sequence-base/README.md

@@ -1,22 +1,50 @@
 ## RAG
 
-This is a "base" version of the RAG-Sequence Model of the the paper [Retrieval-Augmented Generation for Knowledge-Intensive NLP Tasks](https://arxiv.org/pdf/2005.11401.pdf) 
+This is a non-finetuned version of the RAG-Sequence model of the the paper [Retrieval-Augmented Generation for Knowledge-Intensive NLP Tasks](https://arxiv.org/pdf/2005.11401.pdf) 
 by Patrick Lewis, Ethan Perez, Aleksandara Piktus et al.
 
+Rag consits of a *question encoder*, *retriever* and a *generator*. The retriever should be a `RagRetriever` instance. The *question encoder* can be any model that can be loaded with `AutoModel` and the *generator* can be any model that can be loaded with `AutoModelForSeq2SeqLM`. 
+
+This model is a non-finetuned RAG-Sequence model and was created as follows:
+
+```python
+from transformers import RagTokenizer, RagRetriever, RagSequenceForGeneration, AutoTokenizer
+
+model = RagSequenceForGeneration.from_pretrained_question_encoder_generator("facebook/dpr-question_encoder-single-nq-base", "facebook/bart-large")
+
+question_encoder_tokenizer = AutoTokenizer.from_pretrained("facebook/dpr-question_encoder-single-nq-base")
+generator_tokenizer = AutoTokenizer.from_pretrained("facebook/bart-large")
+
+tokenizer = RagTokenizer(question_encoder_tokenizer, generator_tokenizer)
+model.config.use_dummy_dataset = True
+model.config.index_name = "exact"
+retriever = RagRetriever(model.config, question_encoder_tokenizer, generator_tokenizer)
+
+model.save_pretrained("./")
+tokenizer.save_pretrained("./")
+retriever.save_pretrained("./")
+```
+
+Note that the model is *uncased* so that all capital input letters are converted to lower-case.
+
 ## Usage:
 
+*Note*: the model uses the *dummy* retriever as a default. Better results are obtained by using the full retriever, 
+by setting `config.index_name="legacy"` and `config.use_dummy_dataset=False`.
+The model can be fine-tuned as follows:
+
 ```python
-from transformers import RagTokenizer, RagRetriever, RagSequenceForGeneration
+from transformers import RagTokenizer, RagRetriever, RagTokenForGeneration
 
 tokenizer = RagTokenizer.from_pretrained("facebook/rag-sequence-base")
-retriever = RagRetriever.from_pretrained("facebook/rag-sequence-base", index_name="exact", use_dummy_dataset=True)
-model = RagSequenceForGeneration.from_pretrained("facebook/rag-sequence-base", retriever=retriever)
+retriever = RagRetriever.from_pretrained("facebook/rag-sequence-base")
+model = RagTokenForGeneration.from_pretrained("facebook/rag-sequence-base", retriever=retriever)
 
-input_ids = tokenizer("What is the largest country in the world?", return_tensors="pt").input_ids
+input_dict = tokenizer.prepare_seq2seq_batch("who holds the record in 100m freestyle", "michael phelps", return_tensors="pt") 
 
-generated = model.generate(input_ids=input_ids)
-generated_string = tokenizer.batch_decode(generated, skip_special_tokens=True)
+outputs = model(input_dict["input_ids"], labels=input_dict["labels"])
 
-# => should give ["Asia ended in 2010 when China overtook Japan to become the world's second largest economy."]
-# Interesting answer. Definitely on topic, but might factual probably not fully correct.
+loss = outputs.loss
+
+# train on loss
 ```

model_cards/facebook/rag-sequence-nq/README.md

@@ -1,25 +1,36 @@
+---
+language: en
+license: apache-2.0
+datasets:
+- wiki_dpr
+---
 ## RAG
 
 This is the RAG-Sequence Model of the the paper [Retrieval-Augmented Generation for Knowledge-Intensive NLP Tasks](https://arxiv.org/pdf/2005.11401.pdf) 
 by Patrick Lewis, Ethan Perez, Aleksandara Piktus et al.
 
+The model is a *uncased* model, which means that capital letters are simply converted to lower-case letters.
+
+The model consits of a *question_encoder*, *retriever* and a *generator*. The retriever extracts relevant passages from the *wiki_dpr* `train` datasets, which is linked above.
+The question_encoder and retriever are based on `facebook/dpr-question_encoder-single-nq-base` and `facebook/bart-large`, which were jointly finetuned on 
+on the *wiki_dpr* QA dataset in an end-to-end fashion.
+
 ## Usage:
 
+**Note**: In the usage example below only the *dummy* retriever of *wiki_dpr* is used because the complete *lecagy* index requires over 75 GB of RAM.
+The model can generate answers to any factoid question as follows:
+
 ```python
+from transformers import RagTokenizer, RagRetriever, RagSequenceForGeneration 
+ 
+tokenizer = RagTokenizer.from_pretrained("facebook/rag-token-nq") 
+retriever = RagRetriever.from_pretrained("facebook/rag-token-nq", index_name="exact", use_dummy_dataset=True) 
+model = RagSequenceForGeneration.from_pretrained("facebook/rag-token-nq", retriever=retriever) 
+ 
+input_dict = tokenizer.prepare_seq2seq_batch("how many countries are in europe", return_tensors="pt") 
 
-from transformers import RagTokenizer, RagRetriever, RagSequenceForGeneration
+generated = model.generate(input_ids=input_dict["input_ids"]) 
+print(tokenizer.batch_decode(generated, skip_special_tokens=True)[0]) 
 
-tokenizer = RagTokenizer.from_pretrained("facebook/rag-token-nq")
-retriever = RagRetriever.from_pretrained("facebook/rag-token-nq", index_name="exact", use_dummy_dataset=True)
-model = RagSequenceForGeneration.from_pretrained("facebook/rag-token-nq", retriever=retriever)
-
-input_dict = tokenizer.prepare_seq2seq_batch("How many people live in Paris?", "In Paris, there are 10 million people.", return_tensors="pt")
-outputs = model(input_ids=input_dict["input_ids"], labels=input_dict["labels"])
-
-# outputs.loss should give 76.2978
-
-generated = model.generate(input_ids=input_dict["input_ids"])
-generated_string = tokenizer.batch_decode(generated, skip_special_tokens=True)
-
-# generated_string should give 270,000,000 -> not quite correct the answer, but it also only uses a dummy index
+# should give 54 => google says either 44 or 51
 ```